Hb_000170_240

Information

Type -
Description -
Location Contig170: 291122-297369
Sequence    

Annotation

kegg
ID tcc:TCM_035195
description Chaperone DnaJ-domain superfamily protein, putative isoform 1
nr
ID XP_012078265.1
description PREDICTED: auxilin-related protein 1 [Jatropha curcas]
swissprot
ID Q0WQ57
description Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1
trembl
ID A0A067KCU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15895: 291140-297556
cDNA
(Sanger)
(ID:Location)		 009_L24.ab1: 291163-291905

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_240 0.0 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
2 Hb_000802_090 0.0917633042 - - ornithine aminotransferase, putative [Ricinus communis]
3 Hb_002869_050 0.0951641156 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
4 Hb_001205_200 0.1015411006 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000676_260 0.1016063844 - - PREDICTED: uncharacterized protein LOC105639070 [Jatropha curcas]
6 Hb_000418_010 0.1057285635 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
7 Hb_011360_050 0.1074141506 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
8 Hb_002232_480 0.1120360866 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
9 Hb_009545_090 0.1124790944 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
10 Hb_000940_200 0.1128021094 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
11 Hb_109484_010 0.1131272441 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
12 Hb_089140_040 0.1132473314 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
13 Hb_004994_090 0.1139026553 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
14 Hb_006198_020 0.1144840932 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
15 Hb_000009_330 0.1150583755 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
16 Hb_000445_470 0.1158414597 - - PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]
17 Hb_005015_080 0.115992335 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
18 Hb_012799_140 0.1169521772 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
19 Hb_000671_080 0.1171775461 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
20 Hb_000059_020 0.1172666547 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]

Gene co-expression network

sample Hb_000170_240 Hb_000170_240 Hb_000802_090 Hb_000802_090 Hb_000170_240--Hb_000802_090 Hb_002869_050 Hb_002869_050 Hb_000170_240--Hb_002869_050 Hb_001205_200 Hb_001205_200 Hb_000170_240--Hb_001205_200 Hb_000676_260 Hb_000676_260 Hb_000170_240--Hb_000676_260 Hb_000418_010 Hb_000418_010 Hb_000170_240--Hb_000418_010 Hb_011360_050 Hb_011360_050 Hb_000170_240--Hb_011360_050 Hb_000802_090--Hb_011360_050 Hb_002232_480 Hb_002232_480 Hb_000802_090--Hb_002232_480 Hb_001329_200 Hb_001329_200 Hb_000802_090--Hb_001329_200 Hb_003398_080 Hb_003398_080 Hb_000802_090--Hb_003398_080 Hb_000205_240 Hb_000205_240 Hb_000802_090--Hb_000205_240 Hb_007839_020 Hb_007839_020 Hb_000802_090--Hb_007839_020 Hb_002869_050--Hb_002232_480 Hb_000445_470 Hb_000445_470 Hb_002869_050--Hb_000445_470 Hb_003147_060 Hb_003147_060 Hb_002869_050--Hb_003147_060 Hb_005381_020 Hb_005381_020 Hb_002869_050--Hb_005381_020 Hb_009545_090 Hb_009545_090 Hb_002869_050--Hb_009545_090 Hb_000087_060 Hb_000087_060 Hb_001205_200--Hb_000087_060 Hb_004143_100 Hb_004143_100 Hb_001205_200--Hb_004143_100 Hb_000076_160 Hb_000076_160 Hb_001205_200--Hb_000076_160 Hb_000402_230 Hb_000402_230 Hb_001205_200--Hb_000402_230 Hb_000358_230 Hb_000358_230 Hb_001205_200--Hb_000358_230 Hb_003866_080 Hb_003866_080 Hb_001205_200--Hb_003866_080 Hb_005463_050 Hb_005463_050 Hb_000676_260--Hb_005463_050 Hb_000008_420 Hb_000008_420 Hb_000676_260--Hb_000008_420 Hb_109484_010 Hb_109484_010 Hb_000676_260--Hb_109484_010 Hb_000676_260--Hb_000358_230 Hb_012092_050 Hb_012092_050 Hb_000676_260--Hb_012092_050 Hb_000197_030 Hb_000197_030 Hb_000418_010--Hb_000197_030 Hb_000069_480 Hb_000069_480 Hb_000418_010--Hb_000069_480 Hb_000671_080 Hb_000671_080 Hb_000418_010--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_000418_010--Hb_001257_100 Hb_001489_100 Hb_001489_100 Hb_000418_010--Hb_001489_100 Hb_006198_020 Hb_006198_020 Hb_000418_010--Hb_006198_020 Hb_011360_050--Hb_007839_020 Hb_011360_050--Hb_002232_480 Hb_002982_020 Hb_002982_020 Hb_011360_050--Hb_002982_020 Hb_011360_050--Hb_001329_200 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96663 5.4473 2.59521 4.00635 1.71012 1.74846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.16936 2.52015 0.901477 2.85925 1.12183

CAGE analysis