Hb_000170_250

Information

Type -
Description -
Location Contig170: 305374-311355
Sequence    

Annotation

kegg
ID rcu:RCOM_0801620
description amino acid transporter, putative
nr
ID EMT28875.1
description hypothetical protein F775_29828 [Aegilops tauschii]
swissprot
ID -
description -
trembl
ID M8BV15
description Uncharacterized protein OS=Aegilops tauschii GN=F775_29828 PE=4 SV=1
Gene Ontology
ID GO:0005737
description amino acid permease 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15896: 305450-311242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_250 0.0 - - hypothetical protein F775_29828 [Aegilops tauschii]
2 Hb_002615_040 0.1547744547 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
3 Hb_005725_080 0.1613687336 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
4 Hb_001357_140 0.1807382876 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004204_140 0.1821057188 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
6 Hb_001128_060 0.1834466714 - - amino acid permease, putative [Ricinus communis]
7 Hb_000134_110 0.1859391455 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Vitis vinifera]
8 Hb_000062_570 0.1860881749 - - -
9 Hb_000554_010 0.1869778579 - - transporter, putative [Ricinus communis]
10 Hb_002046_190 0.1899697651 - - calcium-binding family protein [Populus trichocarpa]
11 Hb_000307_140 0.1912296787 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
12 Hb_000049_120 0.1938399441 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
13 Hb_032215_050 0.1950755806 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
14 Hb_004218_150 0.1968060804 - - electron transporter, putative [Ricinus communis]
15 Hb_007064_040 0.1983033375 - - hypothetical protein RCOM_0254640 [Ricinus communis]
16 Hb_006070_010 0.1993656035 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
17 Hb_116349_160 0.1999453731 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
18 Hb_000031_030 0.2000863039 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
19 Hb_001922_190 0.2045954125 - - RecName: Full=Hevamine-A; Includes: RecName: Full=Chitinase; Includes: RecName: Full=Lysozyme; Flags: Precursor [Hevea brasiliensis]
20 Hb_001153_150 0.2050204459 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase HMG-CoA synthase 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000170_250 Hb_000170_250 Hb_002615_040 Hb_002615_040 Hb_000170_250--Hb_002615_040 Hb_005725_080 Hb_005725_080 Hb_000170_250--Hb_005725_080 Hb_001357_140 Hb_001357_140 Hb_000170_250--Hb_001357_140 Hb_004204_140 Hb_004204_140 Hb_000170_250--Hb_004204_140 Hb_001128_060 Hb_001128_060 Hb_000170_250--Hb_001128_060 Hb_000134_110 Hb_000134_110 Hb_000170_250--Hb_000134_110 Hb_000554_010 Hb_000554_010 Hb_002615_040--Hb_000554_010 Hb_002615_040--Hb_005725_080 Hb_000316_130 Hb_000316_130 Hb_002615_040--Hb_000316_130 Hb_002681_050 Hb_002681_050 Hb_002615_040--Hb_002681_050 Hb_004052_040 Hb_004052_040 Hb_002615_040--Hb_004052_040 Hb_000442_150 Hb_000442_150 Hb_005725_080--Hb_000442_150 Hb_000307_140 Hb_000307_140 Hb_005725_080--Hb_000307_140 Hb_000699_140 Hb_000699_140 Hb_005725_080--Hb_000699_140 Hb_008246_040 Hb_008246_040 Hb_005725_080--Hb_008246_040 Hb_001357_180 Hb_001357_180 Hb_005725_080--Hb_001357_180 Hb_000031_060 Hb_000031_060 Hb_005725_080--Hb_000031_060 Hb_000421_180 Hb_000421_180 Hb_001357_140--Hb_000421_180 Hb_001357_140--Hb_001357_180 Hb_003787_020 Hb_003787_020 Hb_001357_140--Hb_003787_020 Hb_001960_040 Hb_001960_040 Hb_001357_140--Hb_001960_040 Hb_003376_040 Hb_003376_040 Hb_001357_140--Hb_003376_040 Hb_001671_080 Hb_001671_080 Hb_001357_140--Hb_001671_080 Hb_003206_070 Hb_003206_070 Hb_004204_140--Hb_003206_070 Hb_000676_250 Hb_000676_250 Hb_004204_140--Hb_000676_250 Hb_032215_050 Hb_032215_050 Hb_004204_140--Hb_032215_050 Hb_003943_040 Hb_003943_040 Hb_004204_140--Hb_003943_040 Hb_000085_400 Hb_000085_400 Hb_004204_140--Hb_000085_400 Hb_003571_030 Hb_003571_030 Hb_004204_140--Hb_003571_030 Hb_005167_040 Hb_005167_040 Hb_001128_060--Hb_005167_040 Hb_000086_200 Hb_000086_200 Hb_001128_060--Hb_000086_200 Hb_002027_220 Hb_002027_220 Hb_001128_060--Hb_002027_220 Hb_000392_070 Hb_000392_070 Hb_001128_060--Hb_000392_070 Hb_001696_030 Hb_001696_030 Hb_001128_060--Hb_001696_030 Hb_000031_030 Hb_000031_030 Hb_001128_060--Hb_000031_030 Hb_005918_040 Hb_005918_040 Hb_000134_110--Hb_005918_040 Hb_000316_050 Hb_000316_050 Hb_000134_110--Hb_000316_050 Hb_000134_110--Hb_032215_050 Hb_000096_090 Hb_000096_090 Hb_000134_110--Hb_000096_090 Hb_002498_100 Hb_002498_100 Hb_000134_110--Hb_002498_100 Hb_010174_120 Hb_010174_120 Hb_000134_110--Hb_010174_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
122.651 26.6461 10.981 85.4798 24.8985 63.3391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.285 20.9718 88.4356 7.61832 18.2648

CAGE analysis