Hb_000172_010

Information

Type -
Description -
Location Contig172: 50778-52262
Sequence    

Annotation

kegg
ID tcc:TCM_001135
description VQ motif-containing protein
nr
ID XP_011022779.1
description PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061DJL3
description VQ motif-containing protein OS=Theobroma cacao GN=TCM_001135 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_010 0.0 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
2 Hb_000579_220 0.0807111441 - - transcription factor, putative [Ricinus communis]
3 Hb_006615_190 0.0916769082 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
4 Hb_007237_090 0.0962801545 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001879_050 0.1003418523 - - Disease resistance protein RFL1, putative [Ricinus communis]
6 Hb_000072_160 0.1103596057 - - proline oxidase [Manihot esculenta]
7 Hb_084127_010 0.1126514613 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_000521_210 0.114242301 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
9 Hb_002329_030 0.1171666532 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
10 Hb_002968_010 0.1178390463 - - PREDICTED: pectinesterase [Jatropha curcas]
11 Hb_002783_300 0.1192304415 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
12 Hb_002609_150 0.1307416146 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
13 Hb_002272_070 0.1392232745 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
14 Hb_004122_020 0.140486183 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
15 Hb_006198_060 0.1425876426 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
16 Hb_000101_140 0.1437428466 - - amino acid transporter, putative [Ricinus communis]
17 Hb_014361_130 0.1439303345 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
18 Hb_043939_010 0.14405902 - - hypothetical protein B456_N011100 [Gossypium raimondii]
19 Hb_000856_240 0.1466604307 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_009581_040 0.1472462671 - - hypothetical protein B456_011G052100 [Gossypium raimondii]

Gene co-expression network

sample Hb_000172_010 Hb_000172_010 Hb_000579_220 Hb_000579_220 Hb_000172_010--Hb_000579_220 Hb_006615_190 Hb_006615_190 Hb_000172_010--Hb_006615_190 Hb_007237_090 Hb_007237_090 Hb_000172_010--Hb_007237_090 Hb_001879_050 Hb_001879_050 Hb_000172_010--Hb_001879_050 Hb_000072_160 Hb_000072_160 Hb_000172_010--Hb_000072_160 Hb_084127_010 Hb_084127_010 Hb_000172_010--Hb_084127_010 Hb_000579_220--Hb_007237_090 Hb_000579_220--Hb_084127_010 Hb_000579_220--Hb_006615_190 Hb_020648_020 Hb_020648_020 Hb_000579_220--Hb_020648_020 Hb_000521_210 Hb_000521_210 Hb_000579_220--Hb_000521_210 Hb_006615_190--Hb_007237_090 Hb_006615_190--Hb_084127_010 Hb_006615_190--Hb_000072_160 Hb_002329_030 Hb_002329_030 Hb_006615_190--Hb_002329_030 Hb_007237_090--Hb_084127_010 Hb_007237_090--Hb_000072_160 Hb_007237_090--Hb_000521_210 Hb_000984_100 Hb_000984_100 Hb_001879_050--Hb_000984_100 Hb_002609_150 Hb_002609_150 Hb_001879_050--Hb_002609_150 Hb_002571_010 Hb_002571_010 Hb_001879_050--Hb_002571_010 Hb_001148_040 Hb_001148_040 Hb_001879_050--Hb_001148_040 Hb_001879_050--Hb_000579_220 Hb_002272_070 Hb_002272_070 Hb_000072_160--Hb_002272_070 Hb_000072_160--Hb_002329_030 Hb_145139_010 Hb_145139_010 Hb_000072_160--Hb_145139_010 Hb_002968_010 Hb_002968_010 Hb_000072_160--Hb_002968_010 Hb_014361_130 Hb_014361_130 Hb_000072_160--Hb_014361_130 Hb_084127_010--Hb_000521_210 Hb_074312_020 Hb_074312_020 Hb_084127_010--Hb_074312_020 Hb_084127_010--Hb_020648_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.470365 22.7337 1.17567 7.34303 0.0936277 0.135524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0933578 7.72954 3.53433

CAGE analysis