Hb_000172_040

Information

Type -
Description -
Location Contig172: 81417-83857
Sequence    

Annotation

kegg
ID rcu:RCOM_0197880
description Tetratricopeptide repeat protein, putative
nr
ID XP_002533142.1
description Tetratricopeptide repeat protein, putative [Ricinus communis]
swissprot
ID Q9SIN1
description Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2
trembl
ID B9T4H3
description Tetratricopeptide repeat protein, putative OS=Ricinus communis GN=RCOM_0197880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_040 0.0 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
2 Hb_126871_010 0.0004257321 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
3 Hb_009615_140 0.0007396889 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
4 Hb_006111_050 0.0020808923 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
5 Hb_039046_010 0.002386153 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
6 Hb_004881_090 0.0063543228 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
7 Hb_004324_180 0.0076046948 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000834_120 0.0088353388 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
9 Hb_008895_010 0.0089471458 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000373_090 0.0102206722 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
11 Hb_003486_040 0.0105607628 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
12 Hb_000049_320 0.0115060242 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
13 Hb_008686_050 0.0163131666 - - -
14 Hb_176760_010 0.0173045361 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
15 Hb_007058_020 0.0245292109 - - -
16 Hb_001926_060 0.025507979 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
17 Hb_163180_010 0.0266112041 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_003914_040 0.0284077583 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
19 Hb_007040_020 0.0284153124 - - -
20 Hb_000295_150 0.0292164806 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_040 Hb_000172_040 Hb_126871_010 Hb_126871_010 Hb_000172_040--Hb_126871_010 Hb_009615_140 Hb_009615_140 Hb_000172_040--Hb_009615_140 Hb_006111_050 Hb_006111_050 Hb_000172_040--Hb_006111_050 Hb_039046_010 Hb_039046_010 Hb_000172_040--Hb_039046_010 Hb_004881_090 Hb_004881_090 Hb_000172_040--Hb_004881_090 Hb_004324_180 Hb_004324_180 Hb_000172_040--Hb_004324_180 Hb_126871_010--Hb_009615_140 Hb_126871_010--Hb_039046_010 Hb_126871_010--Hb_006111_050 Hb_126871_010--Hb_004881_090 Hb_126871_010--Hb_004324_180 Hb_009615_140--Hb_039046_010 Hb_009615_140--Hb_006111_050 Hb_009615_140--Hb_004324_180 Hb_009615_140--Hb_004881_090 Hb_006111_050--Hb_004881_090 Hb_006111_050--Hb_039046_010 Hb_000834_120 Hb_000834_120 Hb_006111_050--Hb_000834_120 Hb_039046_010--Hb_004324_180 Hb_008895_010 Hb_008895_010 Hb_039046_010--Hb_008895_010 Hb_004881_090--Hb_000834_120 Hb_000373_090 Hb_000373_090 Hb_004881_090--Hb_000373_090 Hb_003486_040 Hb_003486_040 Hb_004881_090--Hb_003486_040 Hb_000049_320 Hb_000049_320 Hb_004881_090--Hb_000049_320 Hb_004324_180--Hb_008895_010 Hb_004324_180--Hb_006111_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.108031 0.349016 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis