Hb_000172_070

Information

Type -
Description -
Location Contig172: 108206-110693
Sequence    

Annotation

kegg
ID rcu:RCOM_0198410
description trehalose-6-phosphate synthase, putative (EC:3.1.3.12)
nr
ID XP_002533145.1
description trehalose-6-phosphate synthase, putative [Ricinus communis]
swissprot
ID Q5HZ05
description Probable trehalose-phosphate phosphatase J OS=Arabidopsis thaliana GN=TPPJ PE=1 SV=1
trembl
ID B9T4H6
description Trehalose 6-phosphate phosphatase OS=Ricinus communis GN=RCOM_0198410 PE=3 SV=1
Gene Ontology
ID GO:0004805
description probable trehalose-phosphate phosphatase j

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16122: 110699-110989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_070 0.0 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
2 Hb_005618_010 0.0825137792 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
3 Hb_010267_030 0.0900478113 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
4 Hb_005048_090 0.0909831172 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
5 Hb_007292_050 0.0965611443 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
6 Hb_000230_550 0.1085925312 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
7 Hb_002170_010 0.1118030849 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
8 Hb_006951_010 0.1160599873 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
9 Hb_002066_010 0.1175232625 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
10 Hb_002250_140 0.1185638878 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
11 Hb_000984_110 0.1186378483 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
12 Hb_001295_050 0.1217522721 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
13 Hb_000181_390 0.1220668341 - - unknown [Lotus japonicus]
14 Hb_000201_070 0.1231124634 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
15 Hb_173107_020 0.1272801403 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
16 Hb_020301_010 0.1288858439 - - cytochrome P450, putative [Ricinus communis]
17 Hb_114733_010 0.1293339221 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
18 Hb_000365_190 0.1304265652 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
19 Hb_005588_130 0.13408634 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000375_150 0.1356267871 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000172_070 Hb_000172_070 Hb_005618_010 Hb_005618_010 Hb_000172_070--Hb_005618_010 Hb_010267_030 Hb_010267_030 Hb_000172_070--Hb_010267_030 Hb_005048_090 Hb_005048_090 Hb_000172_070--Hb_005048_090 Hb_007292_050 Hb_007292_050 Hb_000172_070--Hb_007292_050 Hb_000230_550 Hb_000230_550 Hb_000172_070--Hb_000230_550 Hb_002170_010 Hb_002170_010 Hb_000172_070--Hb_002170_010 Hb_005618_010--Hb_007292_050 Hb_005618_010--Hb_010267_030 Hb_000181_390 Hb_000181_390 Hb_005618_010--Hb_000181_390 Hb_112145_010 Hb_112145_010 Hb_005618_010--Hb_112145_010 Hb_002725_080 Hb_002725_080 Hb_005618_010--Hb_002725_080 Hb_000201_070 Hb_000201_070 Hb_010267_030--Hb_000201_070 Hb_010267_030--Hb_005048_090 Hb_010267_030--Hb_002170_010 Hb_010267_030--Hb_112145_010 Hb_000984_110 Hb_000984_110 Hb_005048_090--Hb_000984_110 Hb_005048_090--Hb_000230_550 Hb_001295_050 Hb_001295_050 Hb_005048_090--Hb_001295_050 Hb_005048_090--Hb_002170_010 Hb_114733_010 Hb_114733_010 Hb_007292_050--Hb_114733_010 Hb_173107_020 Hb_173107_020 Hb_007292_050--Hb_173107_020 Hb_010174_200 Hb_010174_200 Hb_007292_050--Hb_010174_200 Hb_002250_140 Hb_002250_140 Hb_007292_050--Hb_002250_140 Hb_000230_550--Hb_002170_010 Hb_000230_550--Hb_010267_030 Hb_000230_550--Hb_000984_110 Hb_003145_030 Hb_003145_030 Hb_000230_550--Hb_003145_030 Hb_128216_010 Hb_128216_010 Hb_002170_010--Hb_128216_010 Hb_002170_010--Hb_112145_010 Hb_006951_010 Hb_006951_010 Hb_002170_010--Hb_006951_010 Hb_002534_070 Hb_002534_070 Hb_002170_010--Hb_002534_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109899 17.3031 4.33744 20.7054 0.328593 0.191271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.474509 7.75987

CAGE analysis