Hb_000172_080

Information

Type transcription factor
Description TF Family: ERF
Location Contig172: 149825-150967
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07900g
description POPTRDRAFT_558553; hypothetical protein
nr
ID XP_012093083.1
description PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
swissprot
ID Q8H1E4
description Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1
trembl
ID A0A067LEQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24071 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor rap2-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 042_P17.ab1: 150862-151487

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_080 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
2 Hb_000359_080 0.1016928606 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
3 Hb_004166_010 0.1046915161 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
4 Hb_078901_010 0.1177727918 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
5 Hb_008253_040 0.1218217007 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
6 Hb_001345_030 0.1246679387 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
7 Hb_098160_010 0.1264102177 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
8 Hb_000363_110 0.1283675831 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
9 Hb_002571_010 0.12917642 - - cationic amino acid transporter, putative [Ricinus communis]
10 Hb_012787_040 0.1297809789 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
11 Hb_000087_100 0.1326655432 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
12 Hb_002849_110 0.1346909931 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
13 Hb_158696_010 0.1369879207 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
14 Hb_000808_160 0.1371363594 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
15 Hb_000061_100 0.1385016553 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
16 Hb_001504_270 0.1385179132 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
17 Hb_000103_400 0.139815375 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
18 Hb_000473_080 0.1418744084 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
19 Hb_000397_090 0.143115709 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
20 Hb_002234_200 0.1433097349 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_080 Hb_000172_080 Hb_000359_080 Hb_000359_080 Hb_000172_080--Hb_000359_080 Hb_004166_010 Hb_004166_010 Hb_000172_080--Hb_004166_010 Hb_078901_010 Hb_078901_010 Hb_000172_080--Hb_078901_010 Hb_008253_040 Hb_008253_040 Hb_000172_080--Hb_008253_040 Hb_001345_030 Hb_001345_030 Hb_000172_080--Hb_001345_030 Hb_098160_010 Hb_098160_010 Hb_000172_080--Hb_098160_010 Hb_000473_080 Hb_000473_080 Hb_000359_080--Hb_000473_080 Hb_029866_050 Hb_029866_050 Hb_000359_080--Hb_029866_050 Hb_000003_420 Hb_000003_420 Hb_000359_080--Hb_000003_420 Hb_000103_400 Hb_000103_400 Hb_000359_080--Hb_000103_400 Hb_000363_110 Hb_000363_110 Hb_000359_080--Hb_000363_110 Hb_001863_450 Hb_001863_450 Hb_004166_010--Hb_001863_450 Hb_000061_100 Hb_000061_100 Hb_004166_010--Hb_000061_100 Hb_004166_010--Hb_008253_040 Hb_004466_070 Hb_004466_070 Hb_004166_010--Hb_004466_070 Hb_002571_010 Hb_002571_010 Hb_004166_010--Hb_002571_010 Hb_000805_150 Hb_000805_150 Hb_078901_010--Hb_000805_150 Hb_000434_050 Hb_000434_050 Hb_078901_010--Hb_000434_050 Hb_009476_010 Hb_009476_010 Hb_078901_010--Hb_009476_010 Hb_000245_270 Hb_000245_270 Hb_078901_010--Hb_000245_270 Hb_000373_250 Hb_000373_250 Hb_078901_010--Hb_000373_250 Hb_000856_410 Hb_000856_410 Hb_008253_040--Hb_000856_410 Hb_004030_070 Hb_004030_070 Hb_008253_040--Hb_004030_070 Hb_008253_040--Hb_001863_450 Hb_008253_040--Hb_001345_030 Hb_000397_090 Hb_000397_090 Hb_001345_030--Hb_000397_090 Hb_001345_030--Hb_000363_110 Hb_077995_010 Hb_077995_010 Hb_001345_030--Hb_077995_010 Hb_001345_030--Hb_004166_010 Hb_001345_030--Hb_000359_080 Hb_001405_060 Hb_001405_060 Hb_098160_010--Hb_001405_060 Hb_007574_050 Hb_007574_050 Hb_098160_010--Hb_007574_050 Hb_002234_200 Hb_002234_200 Hb_098160_010--Hb_002234_200 Hb_098160_010--Hb_000363_110 Hb_005282_010 Hb_005282_010 Hb_098160_010--Hb_005282_010 Hb_001898_010 Hb_001898_010 Hb_098160_010--Hb_001898_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5522 878.036 177.77 249.335 12.5222 29.6616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1307 25.6132 23.7938 105.142 165.141

CAGE analysis