Hb_000172_100

Information

Type -
Description -
Location Contig172: 165983-171886
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05710g
description POPTRDRAFT_832274; acyl CoA oxidase family protein
nr
ID XP_012093132.1
description PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Jatropha curcas]
swissprot
ID O65201
description Acyl-coenzyme A oxidase 2, peroxisomal OS=Arabidopsis thaliana GN=ACX2 PE=1 SV=2
trembl
ID A0A067LQL0
description Acyl-coenzyme A oxidase OS=Jatropha curcas GN=JCGZ_24073 PE=3 SV=1
Gene Ontology
ID GO:0005777
description acyl-coenzyme a oxidase peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16125: 166171-171837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_100 0.0 - - PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Jatropha curcas]
2 Hb_004725_050 0.0900424236 - - Rhomboid protein, putative [Ricinus communis]
3 Hb_000291_150 0.0963662193 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
4 Hb_066920_030 0.1003722312 - - PREDICTED: adagio protein 1 [Jatropha curcas]
5 Hb_003607_130 0.102452439 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_003617_020 0.1026195602 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
7 Hb_000072_120 0.1045036141 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_146051_010 0.1056680364 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
9 Hb_001163_100 0.1063542227 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_000487_270 0.10893824 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
11 Hb_001723_100 0.1091150248 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
12 Hb_001217_050 0.1097471662 - - actin binding protein, putative [Ricinus communis]
13 Hb_001404_110 0.1101090461 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
14 Hb_002307_270 0.112121311 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
15 Hb_000329_230 0.1125442833 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
16 Hb_001789_150 0.1126697103 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
17 Hb_001357_040 0.1126855406 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
18 Hb_000140_380 0.1135178095 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
19 Hb_005706_040 0.114089697 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
20 Hb_000836_380 0.1163498722 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]

Gene co-expression network

sample Hb_000172_100 Hb_000172_100 Hb_004725_050 Hb_004725_050 Hb_000172_100--Hb_004725_050 Hb_000291_150 Hb_000291_150 Hb_000172_100--Hb_000291_150 Hb_066920_030 Hb_066920_030 Hb_000172_100--Hb_066920_030 Hb_003607_130 Hb_003607_130 Hb_000172_100--Hb_003607_130 Hb_003617_020 Hb_003617_020 Hb_000172_100--Hb_003617_020 Hb_000072_120 Hb_000072_120 Hb_000172_100--Hb_000072_120 Hb_004725_050--Hb_003617_020 Hb_001357_040 Hb_001357_040 Hb_004725_050--Hb_001357_040 Hb_004725_050--Hb_000291_150 Hb_003544_110 Hb_003544_110 Hb_004725_050--Hb_003544_110 Hb_005706_040 Hb_005706_040 Hb_004725_050--Hb_005706_040 Hb_034585_010 Hb_034585_010 Hb_000291_150--Hb_034585_010 Hb_000291_150--Hb_003617_020 Hb_001329_250 Hb_001329_250 Hb_000291_150--Hb_001329_250 Hb_001440_020 Hb_001440_020 Hb_000291_150--Hb_001440_020 Hb_002289_060 Hb_002289_060 Hb_000291_150--Hb_002289_060 Hb_001404_110 Hb_001404_110 Hb_066920_030--Hb_001404_110 Hb_001723_100 Hb_001723_100 Hb_066920_030--Hb_001723_100 Hb_005977_070 Hb_005977_070 Hb_066920_030--Hb_005977_070 Hb_004030_080 Hb_004030_080 Hb_066920_030--Hb_004030_080 Hb_002830_010 Hb_002830_010 Hb_066920_030--Hb_002830_010 Hb_000347_400 Hb_000347_400 Hb_066920_030--Hb_000347_400 Hb_008279_040 Hb_008279_040 Hb_003607_130--Hb_008279_040 Hb_001259_050 Hb_001259_050 Hb_003607_130--Hb_001259_050 Hb_000173_470 Hb_000173_470 Hb_003607_130--Hb_000173_470 Hb_005245_100 Hb_005245_100 Hb_003607_130--Hb_005245_100 Hb_001717_010 Hb_001717_010 Hb_003607_130--Hb_001717_010 Hb_020178_040 Hb_020178_040 Hb_003607_130--Hb_020178_040 Hb_000329_230 Hb_000329_230 Hb_003617_020--Hb_000329_230 Hb_003617_020--Hb_001357_040 Hb_012395_170 Hb_012395_170 Hb_003617_020--Hb_012395_170 Hb_005276_060 Hb_005276_060 Hb_003617_020--Hb_005276_060 Hb_000322_070 Hb_000322_070 Hb_003617_020--Hb_000322_070 Hb_003617_020--Hb_000072_120 Hb_001473_160 Hb_001473_160 Hb_000072_120--Hb_001473_160 Hb_000072_120--Hb_000329_230 Hb_003906_200 Hb_003906_200 Hb_000072_120--Hb_003906_200 Hb_001674_030 Hb_001674_030 Hb_000072_120--Hb_001674_030 Hb_000072_120--Hb_004030_080 Hb_001679_050 Hb_001679_050 Hb_000072_120--Hb_001679_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.39621 19.2292 7.03104 25.2295 10.3231 8.52539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6438 10.0561 21.3183 9.99559 14.4957

CAGE analysis