Hb_000172_110

Information

Type -
Description -
Location Contig172: 168626-172320
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16127: 172613-177219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_110 0.0 - - -
2 Hb_000866_120 0.0613056678 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
3 Hb_000270_670 0.064877021 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
4 Hb_002316_150 0.0764227319 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
5 Hb_000130_490 0.0905438354 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
6 Hb_000230_500 0.0938409063 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
7 Hb_001999_090 0.0946542625 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
8 Hb_000964_130 0.0950412807 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
9 Hb_007441_220 0.0954343749 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
10 Hb_000213_100 0.096248587 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
11 Hb_001366_310 0.0966863594 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
12 Hb_000392_150 0.0971682778 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
13 Hb_003371_090 0.0972211557 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
14 Hb_006718_020 0.0979379359 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
15 Hb_002234_170 0.0992908299 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
16 Hb_002316_160 0.1016064376 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
17 Hb_001217_050 0.1029705321 - - actin binding protein, putative [Ricinus communis]
18 Hb_002007_160 0.1038235195 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
19 Hb_001799_180 0.103878186 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
20 Hb_000890_050 0.1046103397 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_110 Hb_000172_110 Hb_000866_120 Hb_000866_120 Hb_000172_110--Hb_000866_120 Hb_000270_670 Hb_000270_670 Hb_000172_110--Hb_000270_670 Hb_002316_150 Hb_002316_150 Hb_000172_110--Hb_002316_150 Hb_000130_490 Hb_000130_490 Hb_000172_110--Hb_000130_490 Hb_000230_500 Hb_000230_500 Hb_000172_110--Hb_000230_500 Hb_001999_090 Hb_001999_090 Hb_000172_110--Hb_001999_090 Hb_002007_160 Hb_002007_160 Hb_000866_120--Hb_002007_160 Hb_000866_120--Hb_000270_670 Hb_000866_120--Hb_002316_150 Hb_002798_070 Hb_002798_070 Hb_000866_120--Hb_002798_070 Hb_000890_050 Hb_000890_050 Hb_000866_120--Hb_000890_050 Hb_000270_670--Hb_002316_150 Hb_007441_220 Hb_007441_220 Hb_000270_670--Hb_007441_220 Hb_000270_670--Hb_000890_050 Hb_004143_130 Hb_004143_130 Hb_000270_670--Hb_004143_130 Hb_006718_020 Hb_006718_020 Hb_002316_150--Hb_006718_020 Hb_002316_150--Hb_007441_220 Hb_000140_230 Hb_000140_230 Hb_002316_150--Hb_000140_230 Hb_002316_160 Hb_002316_160 Hb_000130_490--Hb_002316_160 Hb_005486_030 Hb_005486_030 Hb_000130_490--Hb_005486_030 Hb_009767_080 Hb_009767_080 Hb_000130_490--Hb_009767_080 Hb_000130_490--Hb_006718_020 Hb_011671_410 Hb_011671_410 Hb_000130_490--Hb_011671_410 Hb_001999_290 Hb_001999_290 Hb_000130_490--Hb_001999_290 Hb_005188_020 Hb_005188_020 Hb_000230_500--Hb_005188_020 Hb_000041_100 Hb_000041_100 Hb_000230_500--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_000230_500--Hb_003371_090 Hb_002988_040 Hb_002988_040 Hb_000230_500--Hb_002988_040 Hb_030565_030 Hb_030565_030 Hb_000230_500--Hb_030565_030 Hb_004208_030 Hb_004208_030 Hb_000230_500--Hb_004208_030 Hb_002235_040 Hb_002235_040 Hb_001999_090--Hb_002235_040 Hb_004712_130 Hb_004712_130 Hb_001999_090--Hb_004712_130 Hb_001999_090--Hb_006718_020 Hb_001999_090--Hb_007441_220 Hb_001999_090--Hb_002316_160 Hb_027472_070 Hb_027472_070 Hb_001999_090--Hb_027472_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0979 19.2498 4.8682 9.13753 11.1577 7.74796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.55194 9.52783 20.8499 8.08159 13.5674

CAGE analysis