Hb_000172_150

Information

Type -
Description -
Location Contig172: 189519-191331
Sequence    

Annotation

kegg
ID rcu:RCOM_0662450
description hypothetical protein
nr
ID XP_011030965.1
description PREDICTED: protein UPSTREAM OF FLC [Populus euphratica]
swissprot
ID Q9LX14
description Protein UPSTREAM OF FLC OS=Arabidopsis thaliana GN=UFC PE=2 SV=1
trembl
ID B9T4H1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0662450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_150 0.0 - - PREDICTED: protein UPSTREAM OF FLC [Populus euphratica]
2 Hb_000860_030 0.1302289833 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000270_530 0.1395139795 - - hypothetical protein POPTR_0015s08220g [Populus trichocarpa]
4 Hb_001255_030 0.1447155387 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
5 Hb_000378_030 0.145653086 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004757_040 0.1552951427 - - -
7 Hb_000705_070 0.1554509195 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000638_110 0.1558319675 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
9 Hb_011314_010 0.1565403098 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
10 Hb_001502_010 0.1591746023 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
11 Hb_001322_010 0.1624153804 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
12 Hb_156850_040 0.1626636734 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
13 Hb_119600_020 0.1626745236 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_027402_110 0.1634473503 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
15 Hb_103632_010 0.1637758122 - - triacylglycerol lipase, putative [Ricinus communis]
16 Hb_003582_010 0.163997534 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
17 Hb_002783_210 0.1647116763 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
18 Hb_001675_260 0.1651193836 - - nitrate transporter, putative [Ricinus communis]
19 Hb_008200_010 0.1670901123 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
20 Hb_045786_010 0.1681008858 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_150 Hb_000172_150 Hb_000860_030 Hb_000860_030 Hb_000172_150--Hb_000860_030 Hb_000270_530 Hb_000270_530 Hb_000172_150--Hb_000270_530 Hb_001255_030 Hb_001255_030 Hb_000172_150--Hb_001255_030 Hb_000378_030 Hb_000378_030 Hb_000172_150--Hb_000378_030 Hb_004757_040 Hb_004757_040 Hb_000172_150--Hb_004757_040 Hb_000705_070 Hb_000705_070 Hb_000172_150--Hb_000705_070 Hb_001322_010 Hb_001322_010 Hb_000860_030--Hb_001322_010 Hb_000860_030--Hb_000705_070 Hb_022597_010 Hb_022597_010 Hb_000860_030--Hb_022597_010 Hb_000860_030--Hb_001255_030 Hb_156850_040 Hb_156850_040 Hb_000860_030--Hb_156850_040 Hb_000604_050 Hb_000604_050 Hb_000270_530--Hb_000604_050 Hb_000702_040 Hb_000702_040 Hb_000270_530--Hb_000702_040 Hb_103149_010 Hb_103149_010 Hb_000270_530--Hb_103149_010 Hb_000567_220 Hb_000567_220 Hb_000270_530--Hb_000567_220 Hb_003529_010 Hb_003529_010 Hb_000270_530--Hb_003529_010 Hb_103632_010 Hb_103632_010 Hb_001255_030--Hb_103632_010 Hb_027402_110 Hb_027402_110 Hb_001255_030--Hb_027402_110 Hb_001255_030--Hb_004757_040 Hb_002837_150 Hb_002837_150 Hb_001255_030--Hb_002837_150 Hb_001675_260 Hb_001675_260 Hb_001255_030--Hb_001675_260 Hb_007441_100 Hb_007441_100 Hb_000378_030--Hb_007441_100 Hb_001418_050 Hb_001418_050 Hb_000378_030--Hb_001418_050 Hb_000098_230 Hb_000098_230 Hb_000378_030--Hb_000098_230 Hb_000422_060 Hb_000422_060 Hb_000378_030--Hb_000422_060 Hb_032299_020 Hb_032299_020 Hb_000378_030--Hb_032299_020 Hb_011314_010 Hb_011314_010 Hb_000378_030--Hb_011314_010 Hb_004757_040--Hb_103632_010 Hb_000638_110 Hb_000638_110 Hb_004757_040--Hb_000638_110 Hb_001141_010 Hb_001141_010 Hb_004757_040--Hb_001141_010 Hb_000245_070 Hb_000245_070 Hb_004757_040--Hb_000245_070 Hb_004757_040--Hb_002837_150 Hb_000705_070--Hb_001322_010 Hb_000840_220 Hb_000840_220 Hb_000705_070--Hb_000840_220 Hb_000705_070--Hb_000638_110 Hb_003582_010 Hb_003582_010 Hb_000705_070--Hb_003582_010 Hb_001775_060 Hb_001775_060 Hb_000705_070--Hb_001775_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.143188 0.876306 0.16433 2.74726 0.0153531 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.129487 0.122224

CAGE analysis