Hb_000172_170

Information

Type -
Description -
Location Contig172: 212447-214006
Sequence    

Annotation

kegg
ID bvg:104908276
description uncharacterized LOC104908276
nr
ID XP_010695673.1
description PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID Q2AA09
description Retrotransposon gag protein OS=Asparagus officinalis GN=20.t00008 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_170 0.0 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
2 Hb_187610_010 0.0001554125 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
3 Hb_000005_200 0.0001968985 - - -
4 Hb_071517_010 0.0004423366 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
5 Hb_003634_020 0.0004830762 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
6 Hb_160953_010 0.0005852915 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
7 Hb_015036_010 0.0011668631 - - -
8 Hb_001385_030 0.0011669798 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
9 Hb_006150_040 0.0012175123 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
10 Hb_011675_010 0.0015230971 - - -
11 Hb_005411_010 0.0017590778 - - -
12 Hb_121451_010 0.0021544652 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
13 Hb_000552_050 0.0024794967 - - -
14 Hb_002794_020 0.0029107083 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
15 Hb_001408_190 0.002956871 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
16 Hb_166645_010 0.003017776 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105123834 [Populus euphratica]
17 Hb_008673_010 0.0032229656 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
18 Hb_000692_050 0.0035148417 - - -
19 Hb_012595_030 0.0035698403 - - -
20 Hb_005976_100 0.0036272997 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]

Gene co-expression network

sample Hb_000172_170 Hb_000172_170 Hb_187610_010 Hb_187610_010 Hb_000172_170--Hb_187610_010 Hb_000005_200 Hb_000005_200 Hb_000172_170--Hb_000005_200 Hb_071517_010 Hb_071517_010 Hb_000172_170--Hb_071517_010 Hb_003634_020 Hb_003634_020 Hb_000172_170--Hb_003634_020 Hb_160953_010 Hb_160953_010 Hb_000172_170--Hb_160953_010 Hb_015036_010 Hb_015036_010 Hb_000172_170--Hb_015036_010 Hb_187610_010--Hb_003634_020 Hb_187610_010--Hb_000005_200 Hb_187610_010--Hb_160953_010 Hb_187610_010--Hb_071517_010 Hb_187610_010--Hb_015036_010 Hb_000005_200--Hb_071517_010 Hb_000005_200--Hb_003634_020 Hb_000005_200--Hb_160953_010 Hb_006150_040 Hb_006150_040 Hb_000005_200--Hb_006150_040 Hb_071517_010--Hb_006150_040 Hb_071517_010--Hb_003634_020 Hb_071517_010--Hb_160953_010 Hb_003634_020--Hb_160953_010 Hb_003634_020--Hb_015036_010 Hb_001385_030 Hb_001385_030 Hb_003634_020--Hb_001385_030 Hb_160953_010--Hb_015036_010 Hb_160953_010--Hb_001385_030 Hb_015036_010--Hb_001385_030 Hb_011675_010 Hb_011675_010 Hb_015036_010--Hb_011675_010 Hb_005411_010 Hb_005411_010 Hb_015036_010--Hb_005411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0131433 0.0677849

CAGE analysis