Hb_000172_270

Information

Type -
Description -
Location Contig172: 316006-317205
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08090g
description POPTRDRAFT_860490; hypothetical protein
nr
ID KDP46878.1
description hypothetical protein JCGZ_24087 [Jatropha curcas]
swissprot
ID F4JJ23
description Protein NEN4 OS=Arabidopsis thaliana GN=NEN4 PE=2 SV=1
trembl
ID A0A067LHN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24087 PE=4 SV=1
Gene Ontology
ID GO:0003824
description protein nen4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16139: 316036-317207 , PASA_asmbl_16140: 317852-322904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_270 0.0 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
2 Hb_138977_010 0.0641405528 - - unnamed protein product [Vitis vinifera]
3 Hb_000421_040 0.0652130289 - - Peptide transporter, putative [Ricinus communis]
4 Hb_061700_010 0.0657329366 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
5 Hb_010172_040 0.0665156075 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
6 Hb_001289_040 0.0720084789 - - NDR1/HIN1-like 1 [Theobroma cacao]
7 Hb_002809_180 0.075949377 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
8 Hb_001097_170 0.0764453926 - - PREDICTED: protein NDR1 [Jatropha curcas]
9 Hb_001140_290 0.0791194126 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
10 Hb_003549_100 0.0795312003 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
11 Hb_094439_040 0.0800283365 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
12 Hb_000557_080 0.0853857827 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001377_220 0.0875069034 - - dopamine beta-monooxygenase, putative [Ricinus communis]
14 Hb_002662_070 0.0875408125 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
15 Hb_000707_090 0.0880280554 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
16 Hb_077027_010 0.0889737324 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
17 Hb_029587_010 0.0891439748 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
18 Hb_001048_010 0.0891603721 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 7 [Jatropha curcas]
19 Hb_000416_020 0.0893730887 - - conserved hypothetical protein [Ricinus communis]
20 Hb_064396_020 0.0904652662 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]

Gene co-expression network

sample Hb_000172_270 Hb_000172_270 Hb_138977_010 Hb_138977_010 Hb_000172_270--Hb_138977_010 Hb_000421_040 Hb_000421_040 Hb_000172_270--Hb_000421_040 Hb_061700_010 Hb_061700_010 Hb_000172_270--Hb_061700_010 Hb_010172_040 Hb_010172_040 Hb_000172_270--Hb_010172_040 Hb_001289_040 Hb_001289_040 Hb_000172_270--Hb_001289_040 Hb_002809_180 Hb_002809_180 Hb_000172_270--Hb_002809_180 Hb_001140_290 Hb_001140_290 Hb_138977_010--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_138977_010--Hb_002151_070 Hb_010589_010 Hb_010589_010 Hb_138977_010--Hb_010589_010 Hb_002662_070 Hb_002662_070 Hb_138977_010--Hb_002662_070 Hb_138977_010--Hb_002809_180 Hb_000707_090 Hb_000707_090 Hb_000421_040--Hb_000707_090 Hb_000557_080 Hb_000557_080 Hb_000421_040--Hb_000557_080 Hb_000421_040--Hb_061700_010 Hb_000421_040--Hb_001289_040 Hb_000421_040--Hb_010172_040 Hb_108090_010 Hb_108090_010 Hb_061700_010--Hb_108090_010 Hb_142204_010 Hb_142204_010 Hb_061700_010--Hb_142204_010 Hb_061700_010--Hb_000557_080 Hb_061700_010--Hb_000707_090 Hb_010172_040--Hb_002809_180 Hb_000343_070 Hb_000343_070 Hb_010172_040--Hb_000343_070 Hb_010172_040--Hb_000707_090 Hb_001278_120 Hb_001278_120 Hb_010172_040--Hb_001278_120 Hb_094439_040 Hb_094439_040 Hb_001289_040--Hb_094439_040 Hb_001289_040--Hb_000557_080 Hb_077027_010 Hb_077027_010 Hb_001289_040--Hb_077027_010 Hb_006895_010 Hb_006895_010 Hb_001289_040--Hb_006895_010 Hb_064396_020 Hb_064396_020 Hb_001289_040--Hb_064396_020 Hb_001397_020 Hb_001397_020 Hb_002809_180--Hb_001397_020 Hb_002809_180--Hb_001140_290 Hb_003549_100 Hb_003549_100 Hb_002809_180--Hb_003549_100 Hb_002809_180--Hb_010589_010 Hb_003152_020 Hb_003152_020 Hb_002809_180--Hb_003152_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.033229 0.246127 1.27937 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.11978

CAGE analysis