Hb_000172_370

Information

Type -
Description -
Location Contig172: 431141-438810
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_370 0.0 - - -
2 Hb_148912_010 0.0503287756 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003005_020 0.0586319692 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
4 Hb_010436_070 0.0704394963 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
5 Hb_003038_030 0.0711657764 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
6 Hb_118419_020 0.0720131061 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
7 Hb_004195_160 0.0726839561 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
8 Hb_125000_010 0.0738325349 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
9 Hb_007426_230 0.0740998468 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
10 Hb_004440_090 0.0745373148 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
11 Hb_003609_040 0.0757277561 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
12 Hb_001135_160 0.0786474721 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
13 Hb_000905_190 0.0807547082 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
14 Hb_005928_060 0.0815031617 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
15 Hb_063134_010 0.0820596626 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
16 Hb_000386_040 0.0822903894 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
17 Hb_003642_060 0.0823132923 - - hypothetical protein RCOM_1189860 [Ricinus communis]
18 Hb_002149_020 0.0823905172 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
19 Hb_002609_110 0.0825785893 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
20 Hb_000943_070 0.0829435182 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_370 Hb_000172_370 Hb_148912_010 Hb_148912_010 Hb_000172_370--Hb_148912_010 Hb_003005_020 Hb_003005_020 Hb_000172_370--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_000172_370--Hb_010436_070 Hb_003038_030 Hb_003038_030 Hb_000172_370--Hb_003038_030 Hb_118419_020 Hb_118419_020 Hb_000172_370--Hb_118419_020 Hb_004195_160 Hb_004195_160 Hb_000172_370--Hb_004195_160 Hb_148912_010--Hb_003038_030 Hb_002411_170 Hb_002411_170 Hb_148912_010--Hb_002411_170 Hb_063716_050 Hb_063716_050 Hb_148912_010--Hb_063716_050 Hb_000395_170 Hb_000395_170 Hb_148912_010--Hb_000395_170 Hb_125000_010 Hb_125000_010 Hb_148912_010--Hb_125000_010 Hb_004440_090 Hb_004440_090 Hb_003005_020--Hb_004440_090 Hb_000384_090 Hb_000384_090 Hb_003005_020--Hb_000384_090 Hb_000608_030 Hb_000608_030 Hb_003005_020--Hb_000608_030 Hb_003005_020--Hb_148912_010 Hb_000398_180 Hb_000398_180 Hb_003005_020--Hb_000398_180 Hb_010436_070--Hb_125000_010 Hb_010436_070--Hb_118419_020 Hb_000832_140 Hb_000832_140 Hb_010436_070--Hb_000832_140 Hb_009711_030 Hb_009711_030 Hb_010436_070--Hb_009711_030 Hb_002097_110 Hb_002097_110 Hb_010436_070--Hb_002097_110 Hb_003038_030--Hb_002411_170 Hb_141131_010 Hb_141131_010 Hb_003038_030--Hb_141131_010 Hb_000019_230 Hb_000019_230 Hb_003038_030--Hb_000019_230 Hb_004545_060 Hb_004545_060 Hb_003038_030--Hb_004545_060 Hb_000317_430 Hb_000317_430 Hb_118419_020--Hb_000317_430 Hb_000175_070 Hb_000175_070 Hb_118419_020--Hb_000175_070 Hb_118419_020--Hb_125000_010 Hb_118419_020--Hb_002097_110 Hb_007193_100 Hb_007193_100 Hb_118419_020--Hb_007193_100 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_004195_160--Hb_000398_180 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.84972 0.614965 0.991202 1.11092 3.57344 3.71137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65577 3.07405 2.75446 0.833778 0.804542

CAGE analysis