Hb_000172_410

Information

Type -
Description -
Location Contig172: 464548-465634
Sequence    

Annotation

kegg
ID rcu:RCOM_0985130
description metal ion binding protein, putative
nr
ID XP_002528981.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9SSL2
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_0985130 PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal-associated isoprenylated plant protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_410 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_003078_070 0.0871449922 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
3 Hb_001369_670 0.0895365094 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
4 Hb_121540_010 0.0967436241 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
5 Hb_002400_020 0.0979012066 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
6 Hb_004109_240 0.0979062121 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
7 Hb_001660_080 0.0984992393 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
8 Hb_021254_020 0.1015454161 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_000836_420 0.1056512462 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_005381_010 0.1105745662 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
11 Hb_003060_150 0.1111238142 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_028486_010 0.1143228562 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
13 Hb_001310_010 0.1166457918 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
14 Hb_004612_020 0.1174234957 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
15 Hb_004837_200 0.1228430966 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
16 Hb_000069_530 0.1229468113 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
17 Hb_120011_010 0.1247049386 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_002936_030 0.1260216459 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
19 Hb_002311_160 0.1265667451 transcription factor TF Family: ARR-B sensor histidine kinase, putative [Ricinus communis]
20 Hb_182167_010 0.1276629477 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]

Gene co-expression network

sample Hb_000172_410 Hb_000172_410 Hb_003078_070 Hb_003078_070 Hb_000172_410--Hb_003078_070 Hb_001369_670 Hb_001369_670 Hb_000172_410--Hb_001369_670 Hb_121540_010 Hb_121540_010 Hb_000172_410--Hb_121540_010 Hb_002400_020 Hb_002400_020 Hb_000172_410--Hb_002400_020 Hb_004109_240 Hb_004109_240 Hb_000172_410--Hb_004109_240 Hb_001660_080 Hb_001660_080 Hb_000172_410--Hb_001660_080 Hb_000985_140 Hb_000985_140 Hb_003078_070--Hb_000985_140 Hb_021254_020 Hb_021254_020 Hb_003078_070--Hb_021254_020 Hb_004837_200 Hb_004837_200 Hb_003078_070--Hb_004837_200 Hb_000071_090 Hb_000071_090 Hb_003078_070--Hb_000071_090 Hb_000836_420 Hb_000836_420 Hb_003078_070--Hb_000836_420 Hb_001369_670--Hb_003078_070 Hb_160653_010 Hb_160653_010 Hb_001369_670--Hb_160653_010 Hb_003060_150 Hb_003060_150 Hb_001369_670--Hb_003060_150 Hb_001369_670--Hb_004837_200 Hb_001369_670--Hb_121540_010 Hb_121540_010--Hb_003060_150 Hb_005381_010 Hb_005381_010 Hb_121540_010--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_121540_010--Hb_000069_530 Hb_028486_010 Hb_028486_010 Hb_121540_010--Hb_028486_010 Hb_077694_010 Hb_077694_010 Hb_121540_010--Hb_077694_010 Hb_121540_010--Hb_001660_080 Hb_002374_200 Hb_002374_200 Hb_002400_020--Hb_002374_200 Hb_002400_020--Hb_001660_080 Hb_002400_020--Hb_121540_010 Hb_002311_160 Hb_002311_160 Hb_002400_020--Hb_002311_160 Hb_002400_020--Hb_005381_010 Hb_004109_240--Hb_021254_020 Hb_000087_200 Hb_000087_200 Hb_004109_240--Hb_000087_200 Hb_004109_240--Hb_028486_010 Hb_004899_360 Hb_004899_360 Hb_004109_240--Hb_004899_360 Hb_008202_020 Hb_008202_020 Hb_004109_240--Hb_008202_020 Hb_004109_240--Hb_121540_010 Hb_001660_080--Hb_005381_010 Hb_001660_080--Hb_000836_420 Hb_001660_080--Hb_003060_150 Hb_000035_140 Hb_000035_140 Hb_001660_080--Hb_000035_140 Hb_189208_060 Hb_189208_060 Hb_001660_080--Hb_189208_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.27035 23.8447 22.2629 9.26696 0.152449 0.127042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.210845 0.290192 0 1.00106 3.55374

CAGE analysis