Hb_000172_430

Information

Type -
Description -
Location Contig172: 476923-482239
Sequence    

Annotation

kegg
ID rcu:RCOM_0985650
description hypothetical protein
nr
ID XP_002528993.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9NQG5
description Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens GN=RPRD1B PE=1 SV=1
trembl
ID B9SSM4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0985650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16164: 477167-478349 , PASA_asmbl_16165: 479912-480302 , PASA_asmbl_16166: 479389-481402 , PASA_asmbl_16167: 481529-482141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_430 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001247_250 0.0545232069 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
3 Hb_009911_030 0.059344826 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
4 Hb_162275_050 0.0616288167 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
5 Hb_012779_090 0.0631507063 - - PREDICTED: lipase member N [Jatropha curcas]
6 Hb_012194_030 0.0634459646 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
7 Hb_001838_060 0.0654508218 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
8 Hb_002798_070 0.0655499902 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
9 Hb_000201_100 0.0657018043 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
10 Hb_003464_090 0.0659278046 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
11 Hb_007163_120 0.0664152179 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
12 Hb_000025_730 0.0670063242 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
13 Hb_005653_090 0.0671731813 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
14 Hb_003929_280 0.0677237937 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
15 Hb_001195_530 0.0688914011 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003849_110 0.0690851175 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
17 Hb_004208_030 0.0712187006 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
18 Hb_033006_030 0.0713417779 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
19 Hb_000603_280 0.0713840859 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
20 Hb_000049_260 0.0726393188 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000172_430 Hb_000172_430 Hb_001247_250 Hb_001247_250 Hb_000172_430--Hb_001247_250 Hb_009911_030 Hb_009911_030 Hb_000172_430--Hb_009911_030 Hb_162275_050 Hb_162275_050 Hb_000172_430--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_000172_430--Hb_012779_090 Hb_012194_030 Hb_012194_030 Hb_000172_430--Hb_012194_030 Hb_001838_060 Hb_001838_060 Hb_000172_430--Hb_001838_060 Hb_033006_030 Hb_033006_030 Hb_001247_250--Hb_033006_030 Hb_000201_100 Hb_000201_100 Hb_001247_250--Hb_000201_100 Hb_004208_030 Hb_004208_030 Hb_001247_250--Hb_004208_030 Hb_002234_170 Hb_002234_170 Hb_001247_250--Hb_002234_170 Hb_002073_200 Hb_002073_200 Hb_001247_250--Hb_002073_200 Hb_001456_060 Hb_001456_060 Hb_009911_030--Hb_001456_060 Hb_000339_040 Hb_000339_040 Hb_009911_030--Hb_000339_040 Hb_003428_010 Hb_003428_010 Hb_009911_030--Hb_003428_010 Hb_004052_080 Hb_004052_080 Hb_009911_030--Hb_004052_080 Hb_002876_230 Hb_002876_230 Hb_009911_030--Hb_002876_230 Hb_162275_050--Hb_012779_090 Hb_162275_050--Hb_012194_030 Hb_000614_210 Hb_000614_210 Hb_162275_050--Hb_000614_210 Hb_001410_020 Hb_001410_020 Hb_162275_050--Hb_001410_020 Hb_003835_070 Hb_003835_070 Hb_162275_050--Hb_003835_070 Hb_003464_090 Hb_003464_090 Hb_162275_050--Hb_003464_090 Hb_002798_070 Hb_002798_070 Hb_012779_090--Hb_002798_070 Hb_000243_250 Hb_000243_250 Hb_012779_090--Hb_000243_250 Hb_012779_090--Hb_012194_030 Hb_000395_130 Hb_000395_130 Hb_012779_090--Hb_000395_130 Hb_012779_090--Hb_001410_020 Hb_000329_370 Hb_000329_370 Hb_012194_030--Hb_000329_370 Hb_002085_030 Hb_002085_030 Hb_012194_030--Hb_002085_030 Hb_012194_030--Hb_003835_070 Hb_010712_050 Hb_010712_050 Hb_012194_030--Hb_010712_050 Hb_001157_040 Hb_001157_040 Hb_001838_060--Hb_001157_040 Hb_001329_160 Hb_001329_160 Hb_001838_060--Hb_001329_160 Hb_000976_310 Hb_000976_310 Hb_001838_060--Hb_000976_310 Hb_007163_120 Hb_007163_120 Hb_001838_060--Hb_007163_120 Hb_001818_070 Hb_001818_070 Hb_001838_060--Hb_001818_070 Hb_000331_670 Hb_000331_670 Hb_001838_060--Hb_000331_670
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.11052 11.3923 8.5031 5.77098 7.39702 8.64679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.74971 9.03603 9.62166 6.84041 7.87569

CAGE analysis