Hb_000172_440

Information

Type -
Description -
Location Contig172: 482549-486196
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06080g
description POPTRDRAFT_802731; hypothetical protein
nr
ID XP_012075174.1
description PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
swissprot
ID Q09851
description NADPH-dependent 1-acyldihydroxyacetone phosphate reductase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ayr1 PE=3 SV=2
trembl
ID B9HFQ2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s06080g PE=3 SV=2
Gene Ontology
ID GO:0016491
description nadph-dependent 1-acyldihydroxyacetone phosphate reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16168: 482376-486140 , PASA_asmbl_16169: 483897-484243 , PASA_asmbl_16171: 485277-485582 , PASA_asmbl_16172: 483134-483331
cDNA
(Sanger)
(ID:Location)		 006_O04.ab1: 482797-486123

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_440 0.0 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
2 Hb_007477_050 0.0897210423 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
3 Hb_015934_120 0.0931577723 - - PREDICTED: callose synthase 7 [Vitis vinifera]
4 Hb_006683_070 0.0940057629 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
5 Hb_000327_110 0.0986781082 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
6 Hb_005800_030 0.1044428526 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
7 Hb_009661_030 0.1052202821 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
8 Hb_000189_480 0.1095594303 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
9 Hb_000240_030 0.1108964735 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001269_190 0.1191499369 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
11 Hb_004951_060 0.1207116756 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
12 Hb_185255_010 0.1226413091 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
13 Hb_009767_130 0.1229934014 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
14 Hb_000023_260 0.123619025 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
15 Hb_000627_260 0.1249391117 - - chloride channel clc, putative [Ricinus communis]
16 Hb_002481_060 0.1250173712 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
17 Hb_001104_130 0.125561796 - - C-14 sterol reductase, putative [Ricinus communis]
18 Hb_001504_030 0.1265035793 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
19 Hb_157023_020 0.1268722396 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000087_070 0.1280239056 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_440 Hb_000172_440 Hb_007477_050 Hb_007477_050 Hb_000172_440--Hb_007477_050 Hb_015934_120 Hb_015934_120 Hb_000172_440--Hb_015934_120 Hb_006683_070 Hb_006683_070 Hb_000172_440--Hb_006683_070 Hb_000327_110 Hb_000327_110 Hb_000172_440--Hb_000327_110 Hb_005800_030 Hb_005800_030 Hb_000172_440--Hb_005800_030 Hb_009661_030 Hb_009661_030 Hb_000172_440--Hb_009661_030 Hb_000189_480 Hb_000189_480 Hb_007477_050--Hb_000189_480 Hb_001104_130 Hb_001104_130 Hb_007477_050--Hb_001104_130 Hb_003994_300 Hb_003994_300 Hb_007477_050--Hb_003994_300 Hb_002400_320 Hb_002400_320 Hb_007477_050--Hb_002400_320 Hb_007477_050--Hb_009661_030 Hb_015934_120--Hb_006683_070 Hb_001314_080 Hb_001314_080 Hb_015934_120--Hb_001314_080 Hb_185255_010 Hb_185255_010 Hb_015934_120--Hb_185255_010 Hb_005144_050 Hb_005144_050 Hb_015934_120--Hb_005144_050 Hb_015934_120--Hb_005800_030 Hb_006683_070--Hb_185255_010 Hb_000297_120 Hb_000297_120 Hb_006683_070--Hb_000297_120 Hb_001269_190 Hb_001269_190 Hb_006683_070--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_006683_070--Hb_025098_010 Hb_006683_070--Hb_005800_030 Hb_009767_130 Hb_009767_130 Hb_000327_110--Hb_009767_130 Hb_174865_040 Hb_174865_040 Hb_000327_110--Hb_174865_040 Hb_000368_090 Hb_000368_090 Hb_000327_110--Hb_000368_090 Hb_001449_070 Hb_001449_070 Hb_000327_110--Hb_001449_070 Hb_000327_110--Hb_015934_120 Hb_133702_010 Hb_133702_010 Hb_005800_030--Hb_133702_010 Hb_004545_110 Hb_004545_110 Hb_005800_030--Hb_004545_110 Hb_002820_020 Hb_002820_020 Hb_005800_030--Hb_002820_020 Hb_003878_150 Hb_003878_150 Hb_005800_030--Hb_003878_150 Hb_004452_120 Hb_004452_120 Hb_005800_030--Hb_004452_120 Hb_000061_180 Hb_000061_180 Hb_005800_030--Hb_000061_180 Hb_000359_310 Hb_000359_310 Hb_009661_030--Hb_000359_310 Hb_009661_030--Hb_005800_030 Hb_009661_030--Hb_001104_130 Hb_004129_140 Hb_004129_140 Hb_009661_030--Hb_004129_140 Hb_003878_200 Hb_003878_200 Hb_009661_030--Hb_003878_200 Hb_019181_030 Hb_019181_030 Hb_009661_030--Hb_019181_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4497 12.5741 24.5729 53.8239 14.8505 22.0321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.0594 29.8499 12.4429 12.6163 49.2302

CAGE analysis