Hb_000172_450

Information

Type -
Description -
Location Contig172: 489246-489648
Sequence    

Annotation

kegg
ID tcc:TCM_001203
description hypothetical protein
nr
ID XP_007048066.1
description Uncharacterized protein TCM_001203 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DQL6
description Uncharacterized protein OS=Theobroma cacao GN=TCM_001203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_450 0.0 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
2 Hb_001500_020 0.0700168439 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002260_140 0.0769099076 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006351_050 0.080586643 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
5 Hb_180088_010 0.0852580209 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_135757_030 0.0949671055 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
7 Hb_112950_010 0.0951445846 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
8 Hb_003598_050 0.0954688043 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_001541_170 0.0960313006 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
10 Hb_000175_370 0.0965349938 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
11 Hb_007919_010 0.0991206224 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002186_110 0.0991266707 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
13 Hb_009421_060 0.0992131647 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
14 Hb_009079_020 0.1007799367 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
15 Hb_000098_230 0.1059653031 - - Potassium channel AKT2/3, putative [Ricinus communis]
16 Hb_000083_200 0.1081055988 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003175_120 0.1090938465 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
18 Hb_021596_050 0.1095449097 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001579_160 0.1100038639 - - PREDICTED: kininogen-1-like [Jatropha curcas]
20 Hb_028514_010 0.1118831315 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_450 Hb_000172_450 Hb_001500_020 Hb_001500_020 Hb_000172_450--Hb_001500_020 Hb_002260_140 Hb_002260_140 Hb_000172_450--Hb_002260_140 Hb_006351_050 Hb_006351_050 Hb_000172_450--Hb_006351_050 Hb_180088_010 Hb_180088_010 Hb_000172_450--Hb_180088_010 Hb_135757_030 Hb_135757_030 Hb_000172_450--Hb_135757_030 Hb_112950_010 Hb_112950_010 Hb_000172_450--Hb_112950_010 Hb_001500_020--Hb_006351_050 Hb_001500_020--Hb_180088_010 Hb_003598_050 Hb_003598_050 Hb_001500_020--Hb_003598_050 Hb_001500_020--Hb_112950_010 Hb_001500_020--Hb_135757_030 Hb_001818_010 Hb_001818_010 Hb_002260_140--Hb_001818_010 Hb_009079_020 Hb_009079_020 Hb_002260_140--Hb_009079_020 Hb_002260_140--Hb_135757_030 Hb_002260_140--Hb_001500_020 Hb_002260_140--Hb_112950_010 Hb_006351_050--Hb_180088_010 Hb_006351_050--Hb_003598_050 Hb_000497_080 Hb_000497_080 Hb_006351_050--Hb_000497_080 Hb_006351_050--Hb_112950_010 Hb_007919_010 Hb_007919_010 Hb_006351_050--Hb_007919_010 Hb_180088_010--Hb_007919_010 Hb_180088_010--Hb_112950_010 Hb_009421_060 Hb_009421_060 Hb_180088_010--Hb_009421_060 Hb_180088_010--Hb_003598_050 Hb_135757_030--Hb_001818_010 Hb_003175_120 Hb_003175_120 Hb_135757_030--Hb_003175_120 Hb_135757_030--Hb_003598_050 Hb_135757_030--Hb_006351_050 Hb_112950_010--Hb_003598_050 Hb_000083_200 Hb_000083_200 Hb_112950_010--Hb_000083_200 Hb_002686_220 Hb_002686_220 Hb_112950_010--Hb_002686_220 Hb_001349_040 Hb_001349_040 Hb_112950_010--Hb_001349_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.2837 12.0761 91.3284 1.39405 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.770453 14.2815

CAGE analysis