Hb_000172_490

Information

Type -
Description -
Location Contig172: 569492-571857
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06120g
description POPTRDRAFT_562654; hypothetical protein
nr
ID XP_012075176.1
description PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
swissprot
ID Q9SUS5
description E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1
trembl
ID A0A067KSH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09359 PE=4 SV=1
Gene Ontology
ID GO:0046872
description probable e3 ubiquitin-protein ligase rha2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_490 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
2 Hb_014497_030 0.2161664976 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
3 Hb_000540_220 0.2183998027 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
4 Hb_124951_010 0.2193322061 - - chitinase-like protein [Hevea brasiliensis]
5 Hb_000221_230 0.2225116819 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
6 Hb_000521_180 0.2262325166 - - PREDICTED: uncharacterized protein LOC105650335 [Jatropha curcas]
7 Hb_001269_510 0.226789242 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
8 Hb_000185_230 0.2330448844 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_102437_010 0.2362389044 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
10 Hb_089114_010 0.2380613724 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
11 Hb_073973_030 0.2391430495 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
12 Hb_015026_040 0.2396787989 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
13 Hb_001059_090 0.2408362501 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]
14 Hb_011161_030 0.2408912817 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
15 Hb_163508_010 0.2417996489 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
16 Hb_001196_080 0.2451971234 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
17 Hb_000317_190 0.2498661083 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
18 Hb_000076_100 0.2499411515 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
19 Hb_074184_010 0.2502375547 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
20 Hb_000692_120 0.250526749 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]

Gene co-expression network

sample Hb_000172_490 Hb_000172_490 Hb_014497_030 Hb_014497_030 Hb_000172_490--Hb_014497_030 Hb_000540_220 Hb_000540_220 Hb_000172_490--Hb_000540_220 Hb_124951_010 Hb_124951_010 Hb_000172_490--Hb_124951_010 Hb_000221_230 Hb_000221_230 Hb_000172_490--Hb_000221_230 Hb_000521_180 Hb_000521_180 Hb_000172_490--Hb_000521_180 Hb_001269_510 Hb_001269_510 Hb_000172_490--Hb_001269_510 Hb_000189_390 Hb_000189_390 Hb_014497_030--Hb_000189_390 Hb_000803_090 Hb_000803_090 Hb_014497_030--Hb_000803_090 Hb_011609_010 Hb_011609_010 Hb_014497_030--Hb_011609_010 Hb_001776_200 Hb_001776_200 Hb_014497_030--Hb_001776_200 Hb_002301_210 Hb_002301_210 Hb_014497_030--Hb_002301_210 Hb_076233_030 Hb_076233_030 Hb_014497_030--Hb_076233_030 Hb_163508_010 Hb_163508_010 Hb_000540_220--Hb_163508_010 Hb_002965_070 Hb_002965_070 Hb_000540_220--Hb_002965_070 Hb_000164_090 Hb_000164_090 Hb_000540_220--Hb_000164_090 Hb_007188_060 Hb_007188_060 Hb_000540_220--Hb_007188_060 Hb_000540_220--Hb_000221_230 Hb_000563_510 Hb_000563_510 Hb_000540_220--Hb_000563_510 Hb_002600_130 Hb_002600_130 Hb_124951_010--Hb_002600_130 Hb_000317_190 Hb_000317_190 Hb_124951_010--Hb_000317_190 Hb_000076_100 Hb_000076_100 Hb_124951_010--Hb_000076_100 Hb_163968_010 Hb_163968_010 Hb_124951_010--Hb_163968_010 Hb_001214_190 Hb_001214_190 Hb_124951_010--Hb_001214_190 Hb_000134_030 Hb_000134_030 Hb_124951_010--Hb_000134_030 Hb_015026_040 Hb_015026_040 Hb_000221_230--Hb_015026_040 Hb_004586_130 Hb_004586_130 Hb_000221_230--Hb_004586_130 Hb_008020_020 Hb_008020_020 Hb_000221_230--Hb_008020_020 Hb_005394_010 Hb_005394_010 Hb_000221_230--Hb_005394_010 Hb_000680_180 Hb_000680_180 Hb_000221_230--Hb_000680_180 Hb_041895_040 Hb_041895_040 Hb_000221_230--Hb_041895_040 Hb_013834_010 Hb_013834_010 Hb_000521_180--Hb_013834_010 Hb_004495_010 Hb_004495_010 Hb_000521_180--Hb_004495_010 Hb_002325_030 Hb_002325_030 Hb_000521_180--Hb_002325_030 Hb_000521_180--Hb_000134_030 Hb_000260_610 Hb_000260_610 Hb_000521_180--Hb_000260_610 Hb_002400_050 Hb_002400_050 Hb_000521_180--Hb_002400_050 Hb_002450_140 Hb_002450_140 Hb_001269_510--Hb_002450_140 Hb_000424_070 Hb_000424_070 Hb_001269_510--Hb_000424_070 Hb_001269_510--Hb_001776_200 Hb_000058_050 Hb_000058_050 Hb_001269_510--Hb_000058_050 Hb_000313_290 Hb_000313_290 Hb_001269_510--Hb_000313_290 Hb_003026_030 Hb_003026_030 Hb_001269_510--Hb_003026_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.218723 2.9944 4.99056 0.827712 0.929335 1.43222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.358227 0.112662 0 0.205537 0.112555

CAGE analysis