Hb_000172_510

Information

Type -
Description -
Location Contig172: 580272-581124
Sequence    

Annotation

kegg
ID rcu:RCOM_0145120
description protein binding protein, putative
nr
ID KJB44265.1
description hypothetical protein B456_007G243100 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2TKN6
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G243100 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_510 0.0 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
2 Hb_002660_150 0.0999463386 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
3 Hb_001252_090 0.1040497022 - - GDP-D-mannose pyrophosphorylase [Camellia sinensis]
4 Hb_000331_370 0.1096863287 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
5 Hb_000146_040 0.1100908745 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
6 Hb_000107_080 0.1135124264 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
7 Hb_000035_200 0.1147437882 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]
8 Hb_019181_030 0.1160905673 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
9 Hb_052805_010 0.1205269292 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
10 Hb_003929_170 0.124310688 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
11 Hb_005535_080 0.1247279657 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
12 Hb_086639_080 0.1247531034 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000022_050 0.1247678071 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
14 Hb_001699_100 0.1252523367 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
15 Hb_000009_400 0.1266387737 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
16 Hb_067130_010 0.1267672895 - - protein binding protein, putative [Ricinus communis]
17 Hb_004032_030 0.1270107678 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
18 Hb_002960_150 0.1277781489 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
19 Hb_000002_480 0.1278795538 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
20 Hb_005695_120 0.1281356659 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000172_510 Hb_000172_510 Hb_002660_150 Hb_002660_150 Hb_000172_510--Hb_002660_150 Hb_001252_090 Hb_001252_090 Hb_000172_510--Hb_001252_090 Hb_000331_370 Hb_000331_370 Hb_000172_510--Hb_000331_370 Hb_000146_040 Hb_000146_040 Hb_000172_510--Hb_000146_040 Hb_000107_080 Hb_000107_080 Hb_000172_510--Hb_000107_080 Hb_000035_200 Hb_000035_200 Hb_000172_510--Hb_000035_200 Hb_002660_150--Hb_000331_370 Hb_052805_010 Hb_052805_010 Hb_002660_150--Hb_052805_010 Hb_169631_010 Hb_169631_010 Hb_002660_150--Hb_169631_010 Hb_004032_030 Hb_004032_030 Hb_002660_150--Hb_004032_030 Hb_010407_140 Hb_010407_140 Hb_002660_150--Hb_010407_140 Hb_001454_230 Hb_001454_230 Hb_001252_090--Hb_001454_230 Hb_002351_030 Hb_002351_030 Hb_001252_090--Hb_002351_030 Hb_001087_030 Hb_001087_030 Hb_001252_090--Hb_001087_030 Hb_000854_040 Hb_000854_040 Hb_001252_090--Hb_000854_040 Hb_001863_360 Hb_001863_360 Hb_001252_090--Hb_001863_360 Hb_000317_040 Hb_000317_040 Hb_001252_090--Hb_000317_040 Hb_000331_370--Hb_000107_080 Hb_000002_480 Hb_000002_480 Hb_000331_370--Hb_000002_480 Hb_086639_080 Hb_086639_080 Hb_000331_370--Hb_086639_080 Hb_000890_230 Hb_000890_230 Hb_000331_370--Hb_000890_230 Hb_000028_600 Hb_000028_600 Hb_000331_370--Hb_000028_600 Hb_000140_350 Hb_000140_350 Hb_000146_040--Hb_000140_350 Hb_033286_010 Hb_033286_010 Hb_000146_040--Hb_033286_010 Hb_004102_170 Hb_004102_170 Hb_000146_040--Hb_004102_170 Hb_000477_100 Hb_000477_100 Hb_000146_040--Hb_000477_100 Hb_007481_010 Hb_007481_010 Hb_000146_040--Hb_007481_010 Hb_005797_010 Hb_005797_010 Hb_000146_040--Hb_005797_010 Hb_000107_080--Hb_000890_230 Hb_004157_100 Hb_004157_100 Hb_000107_080--Hb_004157_100 Hb_000107_080--Hb_000146_040 Hb_001191_110 Hb_001191_110 Hb_000107_080--Hb_001191_110 Hb_000696_010 Hb_000696_010 Hb_000107_080--Hb_000696_010 Hb_000035_200--Hb_000146_040 Hb_000035_200--Hb_000696_010 Hb_131035_010 Hb_131035_010 Hb_000035_200--Hb_131035_010 Hb_001500_110 Hb_001500_110 Hb_000035_200--Hb_001500_110 Hb_000270_520 Hb_000270_520 Hb_000035_200--Hb_000270_520 Hb_004970_140 Hb_004970_140 Hb_000035_200--Hb_004970_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.68583 4.84032 7.74881 18.1805 4.30863 7.63257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15498 4.53513 6.44451 4.31816 2.82946

CAGE analysis