Hb_000172_530

Information

Type -
Description -
Location Contig172: 588889-590106
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08340g
description POPTRDRAFT_558592; hypothetical protein
nr
ID XP_012075183.1
description PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LES2
description UBP1-associated protein 2A OS=Arabidopsis thaliana GN=UBA2A PE=1 SV=1
trembl
ID A0A067KSI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09364 PE=4 SV=1
Gene Ontology
ID GO:0000166
description ubp1-associated protein 2b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16181: 588780-590194 , PASA_asmbl_16182: 588992-592332
cDNA
(Sanger)
(ID:Location)		 006_G15.ab1: 588789-589591 , 020_K23.ab1: 588789-589519 , 024_F18.ab1: 588789-589542 , 039_M21.ab1: 588789-589535

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_530 0.0 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
2 Hb_001523_010 0.0651579387 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
3 Hb_000320_440 0.0727706639 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
4 Hb_001846_080 0.0729960728 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
5 Hb_006478_070 0.078458588 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
6 Hb_000466_060 0.0842408651 - - phosphofructokinase [Hevea brasiliensis]
7 Hb_005016_030 0.0912775402 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
8 Hb_006173_020 0.0938902554 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
9 Hb_000483_370 0.0953320237 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000088_180 0.0991149919 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
11 Hb_113216_010 0.1004860158 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
12 Hb_012807_120 0.1012367081 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_000270_450 0.1022381809 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
14 Hb_001635_220 0.1026182366 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
15 Hb_000365_350 0.1046738118 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
16 Hb_000260_700 0.1059859038 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
17 Hb_001776_080 0.1060433919 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
18 Hb_000176_140 0.1082421666 - - PREDICTED: bystin [Jatropha curcas]
19 Hb_001825_010 0.1091255438 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
20 Hb_001140_080 0.1108473097 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000172_530 Hb_000172_530 Hb_001523_010 Hb_001523_010 Hb_000172_530--Hb_001523_010 Hb_000320_440 Hb_000320_440 Hb_000172_530--Hb_000320_440 Hb_001846_080 Hb_001846_080 Hb_000172_530--Hb_001846_080 Hb_006478_070 Hb_006478_070 Hb_000172_530--Hb_006478_070 Hb_000466_060 Hb_000466_060 Hb_000172_530--Hb_000466_060 Hb_005016_030 Hb_005016_030 Hb_000172_530--Hb_005016_030 Hb_001523_010--Hb_000466_060 Hb_113216_010 Hb_113216_010 Hb_001523_010--Hb_113216_010 Hb_001523_010--Hb_005016_030 Hb_000270_450 Hb_000270_450 Hb_001523_010--Hb_000270_450 Hb_001825_010 Hb_001825_010 Hb_001523_010--Hb_001825_010 Hb_001776_080 Hb_001776_080 Hb_000320_440--Hb_001776_080 Hb_000088_180 Hb_000088_180 Hb_000320_440--Hb_000088_180 Hb_000260_700 Hb_000260_700 Hb_000320_440--Hb_000260_700 Hb_009615_110 Hb_009615_110 Hb_000320_440--Hb_009615_110 Hb_003777_220 Hb_003777_220 Hb_000320_440--Hb_003777_220 Hb_000483_370 Hb_000483_370 Hb_001846_080--Hb_000483_370 Hb_002172_030 Hb_002172_030 Hb_001846_080--Hb_002172_030 Hb_001846_080--Hb_006478_070 Hb_012654_020 Hb_012654_020 Hb_001846_080--Hb_012654_020 Hb_001846_080--Hb_000320_440 Hb_012807_120 Hb_012807_120 Hb_006478_070--Hb_012807_120 Hb_003506_040 Hb_003506_040 Hb_006478_070--Hb_003506_040 Hb_001140_080 Hb_001140_080 Hb_006478_070--Hb_001140_080 Hb_006478_070--Hb_000320_440 Hb_000466_060--Hb_113216_010 Hb_000213_060 Hb_000213_060 Hb_000466_060--Hb_000213_060 Hb_002837_070 Hb_002837_070 Hb_000466_060--Hb_002837_070 Hb_000016_180 Hb_000016_180 Hb_000466_060--Hb_000016_180 Hb_001178_060 Hb_001178_060 Hb_005016_030--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_005016_030--Hb_000322_170 Hb_002149_040 Hb_002149_040 Hb_005016_030--Hb_002149_040 Hb_006173_020 Hb_006173_020 Hb_005016_030--Hb_006173_020 Hb_005016_030--Hb_000320_440 Hb_001016_060 Hb_001016_060 Hb_005016_030--Hb_001016_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
575.972 91.773 14.8459 23.8297 473.015 689.721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
243.874 171.804 147.023 51.402 18.6367

CAGE analysis