Hb_000172_580

Information

Type -
Description -
Location Contig172: 649731-652849
Sequence    

Annotation

kegg
ID rcu:RCOM_0193840
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002532046.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SV96
description Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1
trembl
ID B9T1C7
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0193840 PE=4 SV=1
Gene Ontology
ID GO:0009793
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16200: 649975-652766 , PASA_asmbl_16201: 649721-652766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_580 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_003376_230 0.0727155246 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
3 Hb_007192_070 0.0818139877 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
4 Hb_001584_200 0.0833271266 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
5 Hb_005800_030 0.0839526947 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
6 Hb_002496_020 0.0907120214 - - DNA binding protein, putative [Ricinus communis]
7 Hb_002014_030 0.0916331579 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
8 Hb_000479_250 0.0932917756 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
9 Hb_001366_180 0.093556654 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
10 Hb_000212_440 0.0944129867 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_007975_060 0.0946648628 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
12 Hb_000462_090 0.0946924534 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
13 Hb_003153_010 0.0958661598 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
14 Hb_006846_150 0.09867556 - - conserved hypothetical protein [Ricinus communis]
15 Hb_133702_010 0.100244593 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_004330_090 0.1006497764 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
17 Hb_018272_020 0.1023018288 - - PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]
18 Hb_008421_020 0.1030419674 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
19 Hb_012799_170 0.1035955923 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
20 Hb_018133_090 0.1036587599 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000172_580 Hb_000172_580 Hb_003376_230 Hb_003376_230 Hb_000172_580--Hb_003376_230 Hb_007192_070 Hb_007192_070 Hb_000172_580--Hb_007192_070 Hb_001584_200 Hb_001584_200 Hb_000172_580--Hb_001584_200 Hb_005800_030 Hb_005800_030 Hb_000172_580--Hb_005800_030 Hb_002496_020 Hb_002496_020 Hb_000172_580--Hb_002496_020 Hb_002014_030 Hb_002014_030 Hb_000172_580--Hb_002014_030 Hb_000212_440 Hb_000212_440 Hb_003376_230--Hb_000212_440 Hb_011512_110 Hb_011512_110 Hb_003376_230--Hb_011512_110 Hb_003153_010 Hb_003153_010 Hb_003376_230--Hb_003153_010 Hb_003376_230--Hb_001584_200 Hb_005405_020 Hb_005405_020 Hb_003376_230--Hb_005405_020 Hb_017987_030 Hb_017987_030 Hb_007192_070--Hb_017987_030 Hb_004330_090 Hb_004330_090 Hb_007192_070--Hb_004330_090 Hb_000074_080 Hb_000074_080 Hb_007192_070--Hb_000074_080 Hb_007192_070--Hb_003376_230 Hb_002553_060 Hb_002553_060 Hb_007192_070--Hb_002553_060 Hb_000224_160 Hb_000224_160 Hb_001584_200--Hb_000224_160 Hb_000462_090 Hb_000462_090 Hb_001584_200--Hb_000462_090 Hb_012022_150 Hb_012022_150 Hb_001584_200--Hb_012022_150 Hb_002374_240 Hb_002374_240 Hb_001584_200--Hb_002374_240 Hb_133702_010 Hb_133702_010 Hb_005800_030--Hb_133702_010 Hb_004545_110 Hb_004545_110 Hb_005800_030--Hb_004545_110 Hb_002820_020 Hb_002820_020 Hb_005800_030--Hb_002820_020 Hb_003878_150 Hb_003878_150 Hb_005800_030--Hb_003878_150 Hb_004452_120 Hb_004452_120 Hb_005800_030--Hb_004452_120 Hb_000061_180 Hb_000061_180 Hb_005800_030--Hb_000061_180 Hb_004191_020 Hb_004191_020 Hb_002496_020--Hb_004191_020 Hb_000479_250 Hb_000479_250 Hb_002496_020--Hb_000479_250 Hb_004531_140 Hb_004531_140 Hb_002496_020--Hb_004531_140 Hb_001369_750 Hb_001369_750 Hb_002496_020--Hb_001369_750 Hb_002496_020--Hb_005405_020 Hb_002496_020--Hb_001584_200 Hb_001366_180 Hb_001366_180 Hb_002014_030--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_002014_030--Hb_006274_030 Hb_000289_110 Hb_000289_110 Hb_002014_030--Hb_000289_110 Hb_002014_030--Hb_017987_030 Hb_002811_130 Hb_002811_130 Hb_002014_030--Hb_002811_130 Hb_018272_020 Hb_018272_020 Hb_002014_030--Hb_018272_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.79205 2.40622 8.85987 9.94107 6.85868 6.58277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.18562 11.0516 7.60174 5.91457 16.6265

CAGE analysis