Hb_000172_610

Information

Type -
Description -
Location Contig172: 675971-683967
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02240g
description hypothetical protein
nr
ID XP_006372502.1
description hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FJ68
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s02240g PE=4 SV=1
Gene Ontology
ID GO:0044464
description importin-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16202: 675920-676686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_610 0.0 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
2 Hb_002627_060 0.070733921 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
3 Hb_000155_080 0.0919816651 - - guanylate-binding family protein [Populus trichocarpa]
4 Hb_004254_040 0.1042229103 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
5 Hb_098315_100 0.1075296861 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
6 Hb_126669_010 0.1078091949 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
7 Hb_000270_400 0.1080464326 - - lipase, putative [Ricinus communis]
8 Hb_000856_100 0.11046589 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
9 Hb_000376_150 0.1158553997 - - O-acyltransferase WSD1 [Gossypium arboreum]
10 Hb_009193_130 0.1240702039 - - hypothetical protein RCOM_1620550 [Ricinus communis]
11 Hb_019654_070 0.127874383 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
12 Hb_000603_200 0.1295758284 - - PREDICTED: myosin-15 [Jatropha curcas]
13 Hb_002506_110 0.1299803508 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
14 Hb_001635_220 0.1311123047 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
15 Hb_000928_230 0.1315662117 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003913_100 0.1334113258 - - copper amine oxidase, putative [Ricinus communis]
17 Hb_002835_190 0.1352147125 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
18 Hb_000523_020 0.1364460755 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
19 Hb_003636_090 0.1392585228 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
20 Hb_000329_620 0.1400959485 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_610 Hb_000172_610 Hb_002627_060 Hb_002627_060 Hb_000172_610--Hb_002627_060 Hb_000155_080 Hb_000155_080 Hb_000172_610--Hb_000155_080 Hb_004254_040 Hb_004254_040 Hb_000172_610--Hb_004254_040 Hb_098315_100 Hb_098315_100 Hb_000172_610--Hb_098315_100 Hb_126669_010 Hb_126669_010 Hb_000172_610--Hb_126669_010 Hb_000270_400 Hb_000270_400 Hb_000172_610--Hb_000270_400 Hb_002627_060--Hb_126669_010 Hb_002627_060--Hb_000155_080 Hb_009193_130 Hb_009193_130 Hb_002627_060--Hb_009193_130 Hb_002627_060--Hb_098315_100 Hb_002627_060--Hb_000270_400 Hb_019654_070 Hb_019654_070 Hb_000155_080--Hb_019654_070 Hb_000155_080--Hb_098315_100 Hb_000856_100 Hb_000856_100 Hb_000155_080--Hb_000856_100 Hb_000155_080--Hb_009193_130 Hb_004254_040--Hb_000270_400 Hb_001635_220 Hb_001635_220 Hb_004254_040--Hb_001635_220 Hb_001140_080 Hb_001140_080 Hb_004254_040--Hb_001140_080 Hb_012807_120 Hb_012807_120 Hb_004254_040--Hb_012807_120 Hb_000009_640 Hb_000009_640 Hb_004254_040--Hb_000009_640 Hb_098315_100--Hb_000856_100 Hb_098315_100--Hb_019654_070 Hb_000376_150 Hb_000376_150 Hb_098315_100--Hb_000376_150 Hb_000365_350 Hb_000365_350 Hb_098315_100--Hb_000365_350 Hb_098315_100--Hb_009193_130 Hb_000928_230 Hb_000928_230 Hb_126669_010--Hb_000928_230 Hb_000523_020 Hb_000523_020 Hb_126669_010--Hb_000523_020 Hb_126669_010--Hb_000270_400 Hb_126669_010--Hb_000376_150 Hb_000270_400--Hb_000523_020 Hb_007545_210 Hb_007545_210 Hb_000270_400--Hb_007545_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93874 0.181211 0.0860309 0.0924401 3.56218 5.27705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.71609 0.907962 0.917062 0.190831 0.0284056

CAGE analysis