Hb_000173_060

Information

Type -
Description -
Location Contig173: 40873-43042
Sequence    

Annotation

kegg
ID rcu:RCOM_0912790
description Dual specificity protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002517161.1
description Dual specificity protein phosphatase, putative [Ricinus communis]
swissprot
ID Q9ZR37
description Dual specificity protein phosphatase 1 OS=Arabidopsis thaliana GN=DSPTP1 PE=1 SV=1
trembl
ID B9RTU2
description Dual specificity protein phosphatase, putative OS=Ricinus communis GN=RCOM_0912790 PE=4 SV=1
Gene Ontology
ID GO:0008138
description dual specificity protein phosphatase 1 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16416: 40115-43639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_060 0.0 - - Dual specificity protein phosphatase, putative [Ricinus communis]
2 Hb_009913_040 0.0906787097 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
3 Hb_000094_290 0.0981494798 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
4 Hb_011926_040 0.100784738 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_000622_350 0.1042267481 - - PREDICTED: protein ABIL1 [Jatropha curcas]
6 Hb_003058_100 0.123668063 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
7 Hb_000300_090 0.1262055357 - - catalytic, putative [Ricinus communis]
8 Hb_008025_010 0.1263397771 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
9 Hb_000665_180 0.1263842868 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
10 Hb_008566_040 0.1263922632 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
11 Hb_006006_060 0.1273892183 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
12 Hb_000399_060 0.1312114489 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
13 Hb_000860_060 0.1333883026 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
14 Hb_000684_260 0.1342870141 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
15 Hb_003540_080 0.1364719781 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_000638_070 0.138019746 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
17 Hb_000645_070 0.1396540753 - - aldehyde dehydrogenase, putative [Ricinus communis]
18 Hb_011486_060 0.1416750013 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007192_020 0.1424299837 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
20 Hb_002955_020 0.1438834537 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000173_060 Hb_000173_060 Hb_009913_040 Hb_009913_040 Hb_000173_060--Hb_009913_040 Hb_000094_290 Hb_000094_290 Hb_000173_060--Hb_000094_290 Hb_011926_040 Hb_011926_040 Hb_000173_060--Hb_011926_040 Hb_000622_350 Hb_000622_350 Hb_000173_060--Hb_000622_350 Hb_003058_100 Hb_003058_100 Hb_000173_060--Hb_003058_100 Hb_000300_090 Hb_000300_090 Hb_000173_060--Hb_000300_090 Hb_009913_040--Hb_011926_040 Hb_004306_110 Hb_004306_110 Hb_009913_040--Hb_004306_110 Hb_002164_020 Hb_002164_020 Hb_009913_040--Hb_002164_020 Hb_000139_300 Hb_000139_300 Hb_009913_040--Hb_000139_300 Hb_008025_010 Hb_008025_010 Hb_009913_040--Hb_008025_010 Hb_000094_290--Hb_000300_090 Hb_000094_290--Hb_000622_350 Hb_000889_100 Hb_000889_100 Hb_000094_290--Hb_000889_100 Hb_000094_290--Hb_011926_040 Hb_010003_010 Hb_010003_010 Hb_000094_290--Hb_010003_010 Hb_000399_060 Hb_000399_060 Hb_011926_040--Hb_000399_060 Hb_006006_060 Hb_006006_060 Hb_011926_040--Hb_006006_060 Hb_174865_040 Hb_174865_040 Hb_011926_040--Hb_174865_040 Hb_000638_070 Hb_000638_070 Hb_011926_040--Hb_000638_070 Hb_002660_110 Hb_002660_110 Hb_000622_350--Hb_002660_110 Hb_004126_040 Hb_004126_040 Hb_000622_350--Hb_004126_040 Hb_000074_100 Hb_000074_100 Hb_000622_350--Hb_000074_100 Hb_000622_350--Hb_000889_100 Hb_019654_020 Hb_019654_020 Hb_003058_100--Hb_019654_020 Hb_002837_040 Hb_002837_040 Hb_003058_100--Hb_002837_040 Hb_000645_070 Hb_000645_070 Hb_003058_100--Hb_000645_070 Hb_022693_130 Hb_022693_130 Hb_003058_100--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_003058_100--Hb_000645_180 Hb_010172_010 Hb_010172_010 Hb_003058_100--Hb_010172_010 Hb_000035_220 Hb_000035_220 Hb_000300_090--Hb_000035_220 Hb_000510_150 Hb_000510_150 Hb_000300_090--Hb_000510_150 Hb_014361_060 Hb_014361_060 Hb_000300_090--Hb_014361_060 Hb_000503_020 Hb_000503_020 Hb_000300_090--Hb_000503_020 Hb_002053_050 Hb_002053_050 Hb_000300_090--Hb_002053_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08684 0.2828 3.17005 5.04378 0.761502 1.77427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.964318 0.909501 0.665769 1.4272 3.09521

CAGE analysis