Hb_000173_100

Information

Type -
Description -
Location Contig173: 81207-82528
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_100 0.0 - - -
2 Hb_004374_060 0.2195857579 - - hypothetical protein POPTR_0003s13140g [Populus trichocarpa]
3 Hb_003001_100 0.2260385709 - - PREDICTED: uncharacterized protein LOC103334281 [Prunus mume]
4 Hb_019219_020 0.2383414053 - - profilin-1 [Jatropha curcas]
5 Hb_004128_210 0.2560451186 - - PREDICTED: protein ALUMINUM SENSITIVE 3 [Jatropha curcas]
6 Hb_000720_160 0.2588826069 - - PREDICTED: C2 domain-containing protein At1g63220 [Jatropha curcas]
7 Hb_002685_180 0.2621654187 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_001864_030 0.2650381987 - - thioredoxin h [Hevea brasiliensis]
9 Hb_004204_190 0.2674770231 - - putative iron-sulfur cluster biosynthesis protein Isd11 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
10 Hb_005298_030 0.2725508125 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
11 Hb_027760_010 0.2726810628 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
12 Hb_000453_210 0.2748486288 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
13 Hb_000723_310 0.276137062 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_081245_010 0.2792513041 - - Caffeic acid 3-O-methyltransferase [Morus notabilis]
15 Hb_010362_020 0.2796357915 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
16 Hb_000008_250 0.2826635629 - - conserved hypothetical protein [Ricinus communis]
17 Hb_019516_020 0.2826662571 - - conserved hypothetical protein [Ricinus communis]
18 Hb_015456_020 0.2853127472 - - -
19 Hb_001214_030 0.2861430951 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
20 Hb_004958_030 0.2867112495 - - PREDICTED: uncharacterized protein LOC104904188 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000173_100 Hb_000173_100 Hb_004374_060 Hb_004374_060 Hb_000173_100--Hb_004374_060 Hb_003001_100 Hb_003001_100 Hb_000173_100--Hb_003001_100 Hb_019219_020 Hb_019219_020 Hb_000173_100--Hb_019219_020 Hb_004128_210 Hb_004128_210 Hb_000173_100--Hb_004128_210 Hb_000720_160 Hb_000720_160 Hb_000173_100--Hb_000720_160 Hb_002685_180 Hb_002685_180 Hb_000173_100--Hb_002685_180 Hb_004204_190 Hb_004204_190 Hb_004374_060--Hb_004204_190 Hb_015456_020 Hb_015456_020 Hb_004374_060--Hb_015456_020 Hb_000300_380 Hb_000300_380 Hb_004374_060--Hb_000300_380 Hb_004374_050 Hb_004374_050 Hb_004374_060--Hb_004374_050 Hb_004032_240 Hb_004032_240 Hb_004374_060--Hb_004032_240 Hb_010680_010 Hb_010680_010 Hb_004374_060--Hb_010680_010 Hb_004958_030 Hb_004958_030 Hb_003001_100--Hb_004958_030 Hb_000067_020 Hb_000067_020 Hb_003001_100--Hb_000067_020 Hb_102438_010 Hb_102438_010 Hb_003001_100--Hb_102438_010 Hb_159085_010 Hb_159085_010 Hb_003001_100--Hb_159085_010 Hb_000008_260 Hb_000008_260 Hb_003001_100--Hb_000008_260 Hb_030565_080 Hb_030565_080 Hb_019219_020--Hb_030565_080 Hb_027760_010 Hb_027760_010 Hb_019219_020--Hb_027760_010 Hb_002338_060 Hb_002338_060 Hb_019219_020--Hb_002338_060 Hb_019219_020--Hb_004374_060 Hb_019516_020 Hb_019516_020 Hb_019219_020--Hb_019516_020 Hb_081245_010 Hb_081245_010 Hb_004128_210--Hb_081245_010 Hb_004650_070 Hb_004650_070 Hb_004128_210--Hb_004650_070 Hb_000733_030 Hb_000733_030 Hb_004128_210--Hb_000733_030 Hb_000809_050 Hb_000809_050 Hb_004128_210--Hb_000809_050 Hb_001198_030 Hb_001198_030 Hb_004128_210--Hb_001198_030 Hb_005348_080 Hb_005348_080 Hb_004128_210--Hb_005348_080 Hb_002809_130 Hb_002809_130 Hb_000720_160--Hb_002809_130 Hb_000720_160--Hb_019516_020 Hb_002081_070 Hb_002081_070 Hb_000720_160--Hb_002081_070 Hb_000484_020 Hb_000484_020 Hb_000720_160--Hb_000484_020 Hb_002232_130 Hb_002232_130 Hb_000720_160--Hb_002232_130 Hb_000720_160--Hb_027760_010 Hb_000453_210 Hb_000453_210 Hb_002685_180--Hb_000453_210 Hb_001495_060 Hb_001495_060 Hb_002685_180--Hb_001495_060 Hb_007904_090 Hb_007904_090 Hb_002685_180--Hb_007904_090 Hb_011242_030 Hb_011242_030 Hb_002685_180--Hb_011242_030 Hb_000376_160 Hb_000376_160 Hb_002685_180--Hb_000376_160 Hb_019033_010 Hb_019033_010 Hb_002685_180--Hb_019033_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.322423 0.0459604 0.0879907 0.125293 1.83756 0.144452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.38541 1.28232 0.168473 0.163429 0.18604

CAGE analysis