Hb_000173_160

Information

Type -
Description -
Location Contig173: 112571-116268
Sequence    

Annotation

kegg
ID rcu:RCOM_0912600
description hypothetical protein
nr
ID XP_002517153.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RTT4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0912600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16425: 112563-116210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000300_030 0.0752468283 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
3 Hb_011457_140 0.0825206392 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
4 Hb_000008_280 0.0919429864 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
5 Hb_008642_060 0.0923720884 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
6 Hb_000358_220 0.0963334245 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
7 Hb_005649_080 0.0976339132 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
8 Hb_003929_210 0.1015130945 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
9 Hb_000367_020 0.1023811567 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
10 Hb_003661_010 0.1044586846 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
11 Hb_001541_150 0.1069823688 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003125_220 0.1072992631 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
13 Hb_003680_020 0.1079791003 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_001226_110 0.1082685793 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
15 Hb_000844_050 0.1083034451 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
16 Hb_000809_250 0.1089080745 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
17 Hb_003540_250 0.1090673225 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
18 Hb_001776_020 0.1105982962 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
19 Hb_000538_280 0.1119468169 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
20 Hb_001008_130 0.1120386364 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]

Gene co-expression network

sample Hb_000173_160 Hb_000173_160 Hb_000300_030 Hb_000300_030 Hb_000173_160--Hb_000300_030 Hb_011457_140 Hb_011457_140 Hb_000173_160--Hb_011457_140 Hb_000008_280 Hb_000008_280 Hb_000173_160--Hb_000008_280 Hb_008642_060 Hb_008642_060 Hb_000173_160--Hb_008642_060 Hb_000358_220 Hb_000358_220 Hb_000173_160--Hb_000358_220 Hb_005649_080 Hb_005649_080 Hb_000173_160--Hb_005649_080 Hb_003661_010 Hb_003661_010 Hb_000300_030--Hb_003661_010 Hb_005305_100 Hb_005305_100 Hb_000300_030--Hb_005305_100 Hb_001541_150 Hb_001541_150 Hb_000300_030--Hb_001541_150 Hb_001414_010 Hb_001414_010 Hb_000300_030--Hb_001414_010 Hb_000300_030--Hb_011457_140 Hb_000300_030--Hb_000358_220 Hb_011457_140--Hb_000358_220 Hb_011457_140--Hb_008642_060 Hb_011457_140--Hb_000008_280 Hb_010315_020 Hb_010315_020 Hb_011457_140--Hb_010315_020 Hb_000008_280--Hb_008642_060 Hb_013405_180 Hb_013405_180 Hb_000008_280--Hb_013405_180 Hb_000008_280--Hb_000300_030 Hb_000008_280--Hb_000358_220 Hb_000179_190 Hb_000179_190 Hb_000008_280--Hb_000179_190 Hb_008642_060--Hb_000358_220 Hb_003929_210 Hb_003929_210 Hb_008642_060--Hb_003929_210 Hb_008642_060--Hb_000179_190 Hb_000030_140 Hb_000030_140 Hb_008642_060--Hb_000030_140 Hb_000358_220--Hb_003929_210 Hb_170077_010 Hb_170077_010 Hb_000358_220--Hb_170077_010 Hb_000066_150 Hb_000066_150 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_002928_190 Hb_002928_190 Hb_005649_080--Hb_002928_190 Hb_001226_110 Hb_001226_110 Hb_005649_080--Hb_001226_110 Hb_005649_080--Hb_170077_010 Hb_020805_150 Hb_020805_150 Hb_005649_080--Hb_020805_150 Hb_005649_080--Hb_000358_220 Hb_003939_060 Hb_003939_060 Hb_005649_080--Hb_003939_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.86171 14.9229 9.28564 11.8493 3.01597 6.17059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.36787 2.38341 3.86421 6.67318 15.0261

CAGE analysis