Hb_000173_210

Information

Type -
Description -
Location Contig173: 176825-180996
Sequence    

Annotation

kegg
ID rcu:RCOM_0678100
description Membrane protein PB1A10.07c, putative
nr
ID XP_012069514.1
description PREDICTED: serine incorporator 3 [Jatropha curcas]
swissprot
ID Q5R533
description Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1
trembl
ID B9RSR7
description Membrane protein PB1A10.07c, putative OS=Ricinus communis GN=RCOM_0678100 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable serine incorporator

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16430: 176871-180993
cDNA
(Sanger)
(ID:Location)		 017_G14.ab1: 176871-179231

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_210 0.0 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
2 Hb_000392_280 0.0897577357 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
3 Hb_000173_370 0.0940241061 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
4 Hb_002897_040 0.1040544409 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
5 Hb_000619_070 0.1074553021 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
6 Hb_006631_010 0.1115516567 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
7 Hb_035360_010 0.1132873913 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
8 Hb_004531_090 0.1177728704 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
9 Hb_005228_120 0.1189884429 - - phospholipase d beta, putative [Ricinus communis]
10 Hb_000544_120 0.1208907471 - - PREDICTED: thymidylate kinase [Jatropha curcas]
11 Hb_002025_140 0.1230217049 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
12 Hb_004032_460 0.1236645754 - - -
13 Hb_002903_120 0.1241118039 - - -
14 Hb_003673_020 0.1253476444 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
15 Hb_000300_540 0.1258566916 - - PREDICTED: syntaxin-132 [Jatropha curcas]
16 Hb_003580_040 0.1301384242 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
17 Hb_000608_340 0.1306458696 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
18 Hb_019871_020 0.1308906506 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
19 Hb_007111_040 0.1313776563 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
20 Hb_007757_100 0.1330102602 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000173_210 Hb_000173_210 Hb_000392_280 Hb_000392_280 Hb_000173_210--Hb_000392_280 Hb_000173_370 Hb_000173_370 Hb_000173_210--Hb_000173_370 Hb_002897_040 Hb_002897_040 Hb_000173_210--Hb_002897_040 Hb_000619_070 Hb_000619_070 Hb_000173_210--Hb_000619_070 Hb_006631_010 Hb_006631_010 Hb_000173_210--Hb_006631_010 Hb_035360_010 Hb_035360_010 Hb_000173_210--Hb_035360_010 Hb_000363_340 Hb_000363_340 Hb_000392_280--Hb_000363_340 Hb_000300_540 Hb_000300_540 Hb_000392_280--Hb_000300_540 Hb_002025_140 Hb_002025_140 Hb_000392_280--Hb_002025_140 Hb_019871_020 Hb_019871_020 Hb_000392_280--Hb_019871_020 Hb_003581_110 Hb_003581_110 Hb_000392_280--Hb_003581_110 Hb_000173_370--Hb_002025_140 Hb_004032_460 Hb_004032_460 Hb_000173_370--Hb_004032_460 Hb_000088_180 Hb_000088_180 Hb_000173_370--Hb_000088_180 Hb_004531_090 Hb_004531_090 Hb_000173_370--Hb_004531_090 Hb_000573_040 Hb_000573_040 Hb_000173_370--Hb_000573_040 Hb_002897_040--Hb_006631_010 Hb_000544_120 Hb_000544_120 Hb_002897_040--Hb_000544_120 Hb_000849_150 Hb_000849_150 Hb_002897_040--Hb_000849_150 Hb_000025_750 Hb_000025_750 Hb_002897_040--Hb_000025_750 Hb_002897_040--Hb_000173_370 Hb_000619_070--Hb_035360_010 Hb_000608_340 Hb_000608_340 Hb_000619_070--Hb_000608_340 Hb_000779_040 Hb_000779_040 Hb_000619_070--Hb_000779_040 Hb_003673_020 Hb_003673_020 Hb_000619_070--Hb_003673_020 Hb_045502_010 Hb_045502_010 Hb_000619_070--Hb_045502_010 Hb_000619_070--Hb_019871_020 Hb_006631_010--Hb_000544_120 Hb_006631_010--Hb_000619_070 Hb_000016_280 Hb_000016_280 Hb_006631_010--Hb_000016_280 Hb_006631_010--Hb_035360_010 Hb_006631_010--Hb_000608_340 Hb_035360_010--Hb_003673_020 Hb_000792_110 Hb_000792_110 Hb_035360_010--Hb_000792_110 Hb_035360_010--Hb_000779_040 Hb_035360_010--Hb_000608_340 Hb_000211_090 Hb_000211_090 Hb_035360_010--Hb_000211_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
214.559 39.0886 40.1672 21.05 349.115 180.322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.4313 29.0758 46.8657 15.6264 12.6085

CAGE analysis