Hb_000173_220

Information

Type -
Description -
Location Contig173: 181399-185972
Sequence    

Annotation

kegg
ID rcu:RCOM_0678110
description 60S ribosomal protein L34, putative
nr
ID XP_012069515.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
swissprot
ID P0C8Q9
description Uncharacterized protein At5g19025 OS=Arabidopsis thaliana GN=At5g19025 PE=2 SV=3
trembl
ID B9RSR8
description 60S ribosomal protein L34, putative OS=Ricinus communis GN=RCOM_0678110 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16430: 176871-180993 , PASA_asmbl_16432: 181486-186040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_220 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
2 Hb_002027_210 0.0455285027 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
3 Hb_001191_090 0.0533809644 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
4 Hb_017948_010 0.0545823681 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
5 Hb_003455_040 0.0584679032 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
6 Hb_000574_480 0.0612241401 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
7 Hb_012675_060 0.0650501683 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
8 Hb_012753_160 0.0684858293 - - ara4-interacting protein, putative [Ricinus communis]
9 Hb_002431_050 0.0684928774 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
10 Hb_003053_030 0.0686920088 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
11 Hb_003376_030 0.0692828699 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
12 Hb_003994_040 0.0701178546 - - -
13 Hb_148200_010 0.0715062926 - - hypothetical protein 33 [Hevea brasiliensis]
14 Hb_000230_510 0.075589533 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
15 Hb_000347_410 0.0767544864 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
16 Hb_000283_110 0.0785162311 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
17 Hb_001279_360 0.0791354109 - - protein with unknown function [Ricinus communis]
18 Hb_000146_020 0.0794266269 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
19 Hb_002918_200 0.0802156217 - - -
20 Hb_153112_030 0.0811479472 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]

Gene co-expression network

sample Hb_000173_220 Hb_000173_220 Hb_002027_210 Hb_002027_210 Hb_000173_220--Hb_002027_210 Hb_001191_090 Hb_001191_090 Hb_000173_220--Hb_001191_090 Hb_017948_010 Hb_017948_010 Hb_000173_220--Hb_017948_010 Hb_003455_040 Hb_003455_040 Hb_000173_220--Hb_003455_040 Hb_000574_480 Hb_000574_480 Hb_000173_220--Hb_000574_480 Hb_012675_060 Hb_012675_060 Hb_000173_220--Hb_012675_060 Hb_003376_030 Hb_003376_030 Hb_002027_210--Hb_003376_030 Hb_005432_030 Hb_005432_030 Hb_002027_210--Hb_005432_030 Hb_000146_020 Hb_000146_020 Hb_002027_210--Hb_000146_020 Hb_002027_210--Hb_001191_090 Hb_002027_210--Hb_003455_040 Hb_003053_030 Hb_003053_030 Hb_001191_090--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_001191_090--Hb_148200_010 Hb_006573_220 Hb_006573_220 Hb_001191_090--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_001191_090--Hb_000181_300 Hb_001191_090--Hb_003376_030 Hb_003994_040 Hb_003994_040 Hb_017948_010--Hb_003994_040 Hb_153112_030 Hb_153112_030 Hb_017948_010--Hb_153112_030 Hb_001279_360 Hb_001279_360 Hb_017948_010--Hb_001279_360 Hb_001083_020 Hb_001083_020 Hb_017948_010--Hb_001083_020 Hb_017948_010--Hb_003053_030 Hb_003455_040--Hb_003376_030 Hb_003455_040--Hb_003994_040 Hb_012753_160 Hb_012753_160 Hb_003455_040--Hb_012753_160 Hb_002097_060 Hb_002097_060 Hb_003455_040--Hb_002097_060 Hb_003656_070 Hb_003656_070 Hb_000574_480--Hb_003656_070 Hb_001998_050 Hb_001998_050 Hb_000574_480--Hb_001998_050 Hb_002963_010 Hb_002963_010 Hb_000574_480--Hb_002963_010 Hb_008173_090 Hb_008173_090 Hb_000574_480--Hb_008173_090 Hb_000574_480--Hb_012675_060 Hb_012675_060--Hb_012753_160 Hb_010080_090 Hb_010080_090 Hb_012675_060--Hb_010080_090 Hb_000834_270 Hb_000834_270 Hb_012675_060--Hb_000834_270 Hb_004586_320 Hb_004586_320 Hb_012675_060--Hb_004586_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3441 10.6454 9.31346 20.2827 23.047 23.644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.1974 75.4936 48.4671 17.3568 16.8409

CAGE analysis