Hb_000173_230

Information

Type -
Description -
Location Contig173: 188514-191958
Sequence    

Annotation

kegg
ID rcu:RCOM_0678120
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012069511.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
swissprot
ID P0C8Q8
description Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
trembl
ID A0A067L7M3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02092 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16435: 190153-190540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_230 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
2 Hb_188279_010 0.0771515379 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
3 Hb_009048_040 0.0987236545 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
4 Hb_000934_270 0.1061289378 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
5 Hb_001675_180 0.1098697266 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
6 Hb_085781_010 0.1102300085 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
7 Hb_013405_030 0.1103614747 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000062_150 0.1106060238 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
9 Hb_007632_220 0.11082523 - - RNA-binding protein, putative [Ricinus communis]
10 Hb_000796_220 0.1119318885 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
11 Hb_000047_030 0.1140872757 - - tfiif-alpha, putative [Ricinus communis]
12 Hb_010139_040 0.1161017284 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_001507_020 0.1175340996 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
14 Hb_000072_220 0.118620502 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
15 Hb_010172_050 0.1196521084 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
16 Hb_003728_080 0.119657489 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
17 Hb_000080_190 0.1199577467 - - -
18 Hb_011316_050 0.1210757248 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
19 Hb_004724_080 0.1213569195 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002686_290 0.1216084509 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]

Gene co-expression network

sample Hb_000173_230 Hb_000173_230 Hb_188279_010 Hb_188279_010 Hb_000173_230--Hb_188279_010 Hb_009048_040 Hb_009048_040 Hb_000173_230--Hb_009048_040 Hb_000934_270 Hb_000934_270 Hb_000173_230--Hb_000934_270 Hb_001675_180 Hb_001675_180 Hb_000173_230--Hb_001675_180 Hb_085781_010 Hb_085781_010 Hb_000173_230--Hb_085781_010 Hb_013405_030 Hb_013405_030 Hb_000173_230--Hb_013405_030 Hb_001847_020 Hb_001847_020 Hb_188279_010--Hb_001847_020 Hb_003683_160 Hb_003683_160 Hb_188279_010--Hb_003683_160 Hb_007317_210 Hb_007317_210 Hb_188279_010--Hb_007317_210 Hb_011571_010 Hb_011571_010 Hb_188279_010--Hb_011571_010 Hb_188279_010--Hb_009048_040 Hb_005754_060 Hb_005754_060 Hb_009048_040--Hb_005754_060 Hb_004109_090 Hb_004109_090 Hb_009048_040--Hb_004109_090 Hb_003195_070 Hb_003195_070 Hb_009048_040--Hb_003195_070 Hb_005489_110 Hb_005489_110 Hb_009048_040--Hb_005489_110 Hb_000080_190 Hb_000080_190 Hb_009048_040--Hb_000080_190 Hb_002506_020 Hb_002506_020 Hb_009048_040--Hb_002506_020 Hb_010172_050 Hb_010172_050 Hb_000934_270--Hb_010172_050 Hb_178968_110 Hb_178968_110 Hb_000934_270--Hb_178968_110 Hb_000022_250 Hb_000022_250 Hb_000934_270--Hb_000022_250 Hb_003266_130 Hb_003266_130 Hb_000934_270--Hb_003266_130 Hb_029584_130 Hb_029584_130 Hb_000934_270--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_000934_270--Hb_000007_150 Hb_044728_010 Hb_044728_010 Hb_001675_180--Hb_044728_010 Hb_000072_220 Hb_000072_220 Hb_001675_180--Hb_000072_220 Hb_000010_330 Hb_000010_330 Hb_001675_180--Hb_000010_330 Hb_001776_140 Hb_001776_140 Hb_001675_180--Hb_001776_140 Hb_008643_210 Hb_008643_210 Hb_001675_180--Hb_008643_210 Hb_000165_250 Hb_000165_250 Hb_001675_180--Hb_000165_250 Hb_000796_220 Hb_000796_220 Hb_085781_010--Hb_000796_220 Hb_012799_180 Hb_012799_180 Hb_085781_010--Hb_012799_180 Hb_007632_220 Hb_007632_220 Hb_085781_010--Hb_007632_220 Hb_007951_050 Hb_007951_050 Hb_085781_010--Hb_007951_050 Hb_085781_010--Hb_009048_040 Hb_011673_030 Hb_011673_030 Hb_085781_010--Hb_011673_030 Hb_000574_390 Hb_000574_390 Hb_013405_030--Hb_000574_390 Hb_001975_160 Hb_001975_160 Hb_013405_030--Hb_001975_160 Hb_002518_140 Hb_002518_140 Hb_013405_030--Hb_002518_140 Hb_000047_030 Hb_000047_030 Hb_013405_030--Hb_000047_030 Hb_001507_020 Hb_001507_020 Hb_013405_030--Hb_001507_020 Hb_015198_020 Hb_015198_020 Hb_013405_030--Hb_015198_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00922 0.358482 0.347727 0.37708 0.807392 1.07263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.412772 0.803417 1.39514 0.251546 0.687072

CAGE analysis