Hb_000173_250

Information

Type -
Description -
Location Contig173: 204404-209814
Sequence    

Annotation

kegg
ID rcu:RCOM_0678140
description ribonucleoside-diphosphate reductase small chain, putative (EC:1.17.4.1)
nr
ID XP_012069509.1
description PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
swissprot
ID P50651
description Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis thaliana GN=RNR2A PE=1 SV=2
trembl
ID A0A067KVB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02090 PE=4 SV=1
Gene Ontology
ID GO:0016491
description ribonucleoside-diphosphate reductase small chain a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16442: 204546-209640 , PASA_asmbl_16443: 204799-205207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_250 0.0 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
2 Hb_019053_060 0.080129302 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
3 Hb_009775_010 0.0820030153 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
4 Hb_000462_090 0.0891461151 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
5 Hb_011689_120 0.0936620157 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
6 Hb_000487_260 0.098834226 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
7 Hb_006846_150 0.102824402 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001322_110 0.1070357568 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000510_290 0.1076247131 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
10 Hb_000227_170 0.1090559384 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_001195_460 0.1091764526 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
12 Hb_000811_070 0.1095585861 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
13 Hb_003747_230 0.1097283423 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
14 Hb_000580_150 0.1118761487 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
15 Hb_001935_100 0.1146676521 - - structural molecule, putative [Ricinus communis]
16 Hb_001410_070 0.114689777 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
17 Hb_009252_060 0.1153050586 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
18 Hb_001109_050 0.116734125 - - PREDICTED: ankyrin-1 [Jatropha curcas]
19 Hb_000723_040 0.1173545867 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_003994_160 0.1177850536 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]

Gene co-expression network

sample Hb_000173_250 Hb_000173_250 Hb_019053_060 Hb_019053_060 Hb_000173_250--Hb_019053_060 Hb_009775_010 Hb_009775_010 Hb_000173_250--Hb_009775_010 Hb_000462_090 Hb_000462_090 Hb_000173_250--Hb_000462_090 Hb_011689_120 Hb_011689_120 Hb_000173_250--Hb_011689_120 Hb_000487_260 Hb_000487_260 Hb_000173_250--Hb_000487_260 Hb_006846_150 Hb_006846_150 Hb_000173_250--Hb_006846_150 Hb_009252_060 Hb_009252_060 Hb_019053_060--Hb_009252_060 Hb_019053_060--Hb_000487_260 Hb_001935_100 Hb_001935_100 Hb_019053_060--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_019053_060--Hb_001410_070 Hb_001946_160 Hb_001946_160 Hb_019053_060--Hb_001946_160 Hb_006538_120 Hb_006538_120 Hb_009775_010--Hb_006538_120 Hb_000221_140 Hb_000221_140 Hb_009775_010--Hb_000221_140 Hb_000580_150 Hb_000580_150 Hb_009775_010--Hb_000580_150 Hb_009775_010--Hb_001410_070 Hb_001660_120 Hb_001660_120 Hb_009775_010--Hb_001660_120 Hb_001584_200 Hb_001584_200 Hb_000462_090--Hb_001584_200 Hb_000340_150 Hb_000340_150 Hb_000462_090--Hb_000340_150 Hb_000172_580 Hb_000172_580 Hb_000462_090--Hb_000172_580 Hb_000462_090--Hb_009775_010 Hb_003376_230 Hb_003376_230 Hb_000462_090--Hb_003376_230 Hb_011689_120--Hb_006846_150 Hb_001322_110 Hb_001322_110 Hb_011689_120--Hb_001322_110 Hb_000403_070 Hb_000403_070 Hb_011689_120--Hb_000403_070 Hb_002872_050 Hb_002872_050 Hb_011689_120--Hb_002872_050 Hb_000811_070 Hb_000811_070 Hb_011689_120--Hb_000811_070 Hb_001318_260 Hb_001318_260 Hb_011689_120--Hb_001318_260 Hb_000487_260--Hb_000811_070 Hb_000487_260--Hb_006846_150 Hb_000796_160 Hb_000796_160 Hb_000487_260--Hb_000796_160 Hb_000487_260--Hb_001935_100 Hb_008421_020 Hb_008421_020 Hb_000487_260--Hb_008421_020 Hb_006846_150--Hb_000811_070 Hb_006846_150--Hb_000403_070 Hb_004951_060 Hb_004951_060 Hb_006846_150--Hb_004951_060 Hb_012799_170 Hb_012799_170 Hb_006846_150--Hb_012799_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.18306 5.69277 16.2665 6.80712 6.3185 7.63217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.74032 19.3336 8.70644 7.08554 25.3411

CAGE analysis