Hb_000173_270

Information

Type -
Description -
Location Contig173: 228915-235002
Sequence    

Annotation

kegg
ID rcu:RCOM_0678200
description big map kinase/bmk, putative (EC:2.7.11.24)
nr
ID XP_012069505.1
description PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
swissprot
ID Q8W4J2
description Mitogen-activated protein kinase 16 OS=Arabidopsis thaliana GN=MPK16 PE=2 SV=2
trembl
ID A0A067KYM8
description Mitogen-activated protein kinase OS=Jatropha curcas GN=JCGZ_02086 PE=4 SV=1
Gene Ontology
ID GO:0004707
description mitogen-activated protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16449: 229093-231563 , PASA_asmbl_16450: 231564-232745 , PASA_asmbl_16451: 232772-234727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_270 0.0 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
2 Hb_000260_410 0.0705825066 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
3 Hb_005365_010 0.0762123847 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
4 Hb_001629_120 0.079133649 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
5 Hb_006570_060 0.0814926605 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
6 Hb_044653_050 0.0968782961 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
7 Hb_000272_030 0.0998854651 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
8 Hb_001143_120 0.1005184773 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
9 Hb_000941_090 0.1061569147 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
10 Hb_001352_030 0.1073312509 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
11 Hb_002311_280 0.108360823 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
12 Hb_000922_160 0.109012867 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
13 Hb_070136_010 0.1109959455 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
14 Hb_006478_050 0.1120574914 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
15 Hb_000818_090 0.1139443726 - - glutamate receptor 3 plant, putative [Ricinus communis]
16 Hb_000181_330 0.116068664 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
17 Hb_003531_050 0.1208546057 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
18 Hb_001301_260 0.122594579 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
19 Hb_007130_020 0.1230472525 - - -
20 Hb_017491_010 0.1236309336 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000173_270 Hb_000173_270 Hb_000260_410 Hb_000260_410 Hb_000173_270--Hb_000260_410 Hb_005365_010 Hb_005365_010 Hb_000173_270--Hb_005365_010 Hb_001629_120 Hb_001629_120 Hb_000173_270--Hb_001629_120 Hb_006570_060 Hb_006570_060 Hb_000173_270--Hb_006570_060 Hb_044653_050 Hb_044653_050 Hb_000173_270--Hb_044653_050 Hb_000272_030 Hb_000272_030 Hb_000173_270--Hb_000272_030 Hb_017491_010 Hb_017491_010 Hb_000260_410--Hb_017491_010 Hb_000260_410--Hb_000272_030 Hb_000260_410--Hb_001629_120 Hb_000941_090 Hb_000941_090 Hb_000260_410--Hb_000941_090 Hb_000818_090 Hb_000818_090 Hb_000260_410--Hb_000818_090 Hb_005365_010--Hb_001629_120 Hb_005365_010--Hb_000818_090 Hb_007270_020 Hb_007270_020 Hb_005365_010--Hb_007270_020 Hb_001417_060 Hb_001417_060 Hb_005365_010--Hb_001417_060 Hb_005365_010--Hb_044653_050 Hb_001629_120--Hb_000818_090 Hb_000023_130 Hb_000023_130 Hb_001629_120--Hb_000023_130 Hb_000185_170 Hb_000185_170 Hb_001629_120--Hb_000185_170 Hb_001051_010 Hb_001051_010 Hb_001629_120--Hb_001051_010 Hb_006570_060--Hb_000272_030 Hb_006570_060--Hb_000260_410 Hb_001143_120 Hb_001143_120 Hb_006570_060--Hb_001143_120 Hb_004880_050 Hb_004880_050 Hb_006570_060--Hb_004880_050 Hb_000659_040 Hb_000659_040 Hb_006570_060--Hb_000659_040 Hb_007130_020 Hb_007130_020 Hb_044653_050--Hb_007130_020 Hb_007894_120 Hb_007894_120 Hb_044653_050--Hb_007894_120 Hb_044653_050--Hb_017491_010 Hb_004228_070 Hb_004228_070 Hb_044653_050--Hb_004228_070 Hb_001301_260 Hb_001301_260 Hb_044653_050--Hb_001301_260 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175585 14.232 30.1183 23.095 0.118037 0.108737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13676 0.928947 0.175494 5.51772 30.9999

CAGE analysis