Hb_000173_280

Information

Type -
Description -
Location Contig173: 235110-239298
Sequence    

Annotation

kegg
ID rcu:RCOM_0678210
description Speckle-type POZ protein, putative
nr
ID XP_002516797.1
description Speckle-type POZ protein, putative [Ricinus communis]
swissprot
ID Q9M8J9
description BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1
trembl
ID B9RSS8
description Speckle-type POZ protein, putative OS=Ricinus communis GN=RCOM_0678210 PE=4 SV=1
Gene Ontology
ID GO:0005515
description btb poz and math domain-containing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16452: 235129-239298 , PASA_asmbl_16454: 235129-235943 , PASA_asmbl_16456: 237537-237693 , PASA_asmbl_16457: 236162-236388 , PASA_asmbl_16458: 239776-242707
cDNA
(Sanger)
(ID:Location)		 031_G21.ab1: 238319-239298

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_280 0.0 - - Speckle-type POZ protein, putative [Ricinus communis]
2 Hb_001221_430 0.0486988472 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
3 Hb_001359_050 0.0555118108 - - conserved hypothetical protein [Ricinus communis]
4 Hb_164390_010 0.0598723802 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
5 Hb_006570_080 0.0617999167 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
6 Hb_000778_010 0.0630200347 - - hypothetical protein [Bacillus subtilis]
7 Hb_005588_060 0.0655193595 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
8 Hb_001221_110 0.0665293894 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
9 Hb_002936_010 0.0691963104 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
10 Hb_001876_050 0.0703756515 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
11 Hb_001511_060 0.0714243383 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
12 Hb_002007_080 0.0715175777 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
13 Hb_000392_420 0.0721378385 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
14 Hb_093458_040 0.073514006 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
15 Hb_001278_100 0.0735483668 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
16 Hb_003465_030 0.074906927 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004990_010 0.0749950376 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
18 Hb_168978_010 0.0755294562 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
19 Hb_006831_140 0.0764799287 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
20 Hb_000484_130 0.0768781725 - - splicing factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000173_280 Hb_000173_280 Hb_001221_430 Hb_001221_430 Hb_000173_280--Hb_001221_430 Hb_001359_050 Hb_001359_050 Hb_000173_280--Hb_001359_050 Hb_164390_010 Hb_164390_010 Hb_000173_280--Hb_164390_010 Hb_006570_080 Hb_006570_080 Hb_000173_280--Hb_006570_080 Hb_000778_010 Hb_000778_010 Hb_000173_280--Hb_000778_010 Hb_005588_060 Hb_005588_060 Hb_000173_280--Hb_005588_060 Hb_002456_010 Hb_002456_010 Hb_001221_430--Hb_002456_010 Hb_017387_010 Hb_017387_010 Hb_001221_430--Hb_017387_010 Hb_001221_430--Hb_001359_050 Hb_000107_660 Hb_000107_660 Hb_001221_430--Hb_000107_660 Hb_000460_080 Hb_000460_080 Hb_001221_430--Hb_000460_080 Hb_024958_010 Hb_024958_010 Hb_001359_050--Hb_024958_010 Hb_008725_230 Hb_008725_230 Hb_001359_050--Hb_008725_230 Hb_001221_110 Hb_001221_110 Hb_001359_050--Hb_001221_110 Hb_001359_050--Hb_006570_080 Hb_003464_090 Hb_003464_090 Hb_001359_050--Hb_003464_090 Hb_000365_230 Hb_000365_230 Hb_164390_010--Hb_000365_230 Hb_007894_150 Hb_007894_150 Hb_164390_010--Hb_007894_150 Hb_163175_010 Hb_163175_010 Hb_164390_010--Hb_163175_010 Hb_002400_340 Hb_002400_340 Hb_164390_010--Hb_002400_340 Hb_004109_320 Hb_004109_320 Hb_164390_010--Hb_004109_320 Hb_171900_090 Hb_171900_090 Hb_164390_010--Hb_171900_090 Hb_002936_010 Hb_002936_010 Hb_006570_080--Hb_002936_010 Hb_006570_080--Hb_005588_060 Hb_000460_030 Hb_000460_030 Hb_006570_080--Hb_000460_030 Hb_168978_010 Hb_168978_010 Hb_006570_080--Hb_168978_010 Hb_000392_420 Hb_000392_420 Hb_000778_010--Hb_000392_420 Hb_000663_060 Hb_000663_060 Hb_000778_010--Hb_000663_060 Hb_000778_010--Hb_000365_230 Hb_000778_010--Hb_164390_010 Hb_007472_070 Hb_007472_070 Hb_000778_010--Hb_007472_070 Hb_003058_120 Hb_003058_120 Hb_005588_060--Hb_003058_120 Hb_005588_060--Hb_002936_010 Hb_004108_220 Hb_004108_220 Hb_005588_060--Hb_004108_220 Hb_023001_040 Hb_023001_040 Hb_005588_060--Hb_023001_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.83896 15.0202 13.4412 15.7655 11.3524 9.27139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1157 17.6442 12.6283 16.5153 11.0968

CAGE analysis