Hb_000173_290

Information

Type -
Description -
Location Contig173: 239987-240706
Sequence    

Annotation

kegg
ID rcu:RCOM_0678220
description guanylate kinase, putative (EC:2.7.4.8)
nr
ID XP_002516798.1
description guanylate kinase, putative [Ricinus communis]
swissprot
ID Q94JM2
description Guanylate kinase 3, chloroplastic OS=Arabidopsis thaliana GN=GK3 PE=2 SV=1
trembl
ID B9RSS9
description Guanylate kinase, putative OS=Ricinus communis GN=RCOM_0678220 PE=4 SV=1
Gene Ontology
ID GO:0004385
description guanylate kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_290 0.0 - - guanylate kinase, putative [Ricinus communis]
2 Hb_000120_790 0.0704532496 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
3 Hb_000054_090 0.0715478535 - - zinc finger protein, putative [Ricinus communis]
4 Hb_000206_210 0.0720020826 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
5 Hb_000342_130 0.0721232333 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
6 Hb_002200_080 0.0740366843 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
7 Hb_000777_040 0.0771036743 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
8 Hb_007691_030 0.0774773122 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
9 Hb_001971_010 0.0782129687 - - F23N19.4 [Arabidopsis thaliana]
10 Hb_005144_160 0.0792355033 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
11 Hb_004724_080 0.0798606579 - - conserved hypothetical protein [Ricinus communis]
12 Hb_032202_190 0.0799817555 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
13 Hb_005663_060 0.0805340448 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
14 Hb_000928_210 0.0814589163 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
15 Hb_000010_330 0.0815170598 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
16 Hb_002739_100 0.0832246474 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
17 Hb_002235_250 0.0849653925 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
18 Hb_002685_210 0.0854730964 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
19 Hb_001675_180 0.0862576059 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
20 Hb_003177_030 0.0867342093 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]

Gene co-expression network

sample Hb_000173_290 Hb_000173_290 Hb_000120_790 Hb_000120_790 Hb_000173_290--Hb_000120_790 Hb_000054_090 Hb_000054_090 Hb_000173_290--Hb_000054_090 Hb_000206_210 Hb_000206_210 Hb_000173_290--Hb_000206_210 Hb_000342_130 Hb_000342_130 Hb_000173_290--Hb_000342_130 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000777_040 Hb_000777_040 Hb_000173_290--Hb_000777_040 Hb_000120_790--Hb_000342_130 Hb_007691_030 Hb_007691_030 Hb_000120_790--Hb_007691_030 Hb_003010_030 Hb_003010_030 Hb_000120_790--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_000120_790--Hb_000093_160 Hb_001776_140 Hb_001776_140 Hb_000120_790--Hb_001776_140 Hb_001006_140 Hb_001006_140 Hb_000120_790--Hb_001006_140 Hb_007672_060 Hb_007672_060 Hb_000054_090--Hb_007672_060 Hb_001252_130 Hb_001252_130 Hb_000054_090--Hb_001252_130 Hb_007017_030 Hb_007017_030 Hb_000054_090--Hb_007017_030 Hb_000081_160 Hb_000081_160 Hb_000054_090--Hb_000081_160 Hb_001971_010 Hb_001971_010 Hb_000054_090--Hb_001971_010 Hb_004254_120 Hb_004254_120 Hb_000206_210--Hb_004254_120 Hb_024185_020 Hb_024185_020 Hb_000206_210--Hb_024185_020 Hb_000206_210--Hb_000777_040 Hb_009838_080 Hb_009838_080 Hb_000206_210--Hb_009838_080 Hb_000928_210 Hb_000928_210 Hb_000206_210--Hb_000928_210 Hb_004841_010 Hb_004841_010 Hb_000342_130--Hb_004841_010 Hb_065500_060 Hb_065500_060 Hb_000342_130--Hb_065500_060 Hb_000883_020 Hb_000883_020 Hb_000342_130--Hb_000883_020 Hb_000331_260 Hb_000331_260 Hb_000342_130--Hb_000331_260 Hb_000010_330 Hb_000010_330 Hb_002200_080--Hb_000010_330 Hb_005144_160 Hb_005144_160 Hb_002200_080--Hb_005144_160 Hb_019280_040 Hb_019280_040 Hb_002200_080--Hb_019280_040 Hb_002200_080--Hb_007691_030 Hb_003195_070 Hb_003195_070 Hb_002200_080--Hb_003195_070 Hb_000085_160 Hb_000085_160 Hb_002200_080--Hb_000085_160 Hb_001009_270 Hb_001009_270 Hb_000777_040--Hb_001009_270 Hb_001633_050 Hb_001633_050 Hb_000777_040--Hb_001633_050 Hb_000985_030 Hb_000985_030 Hb_000777_040--Hb_000985_030 Hb_005779_060 Hb_005779_060 Hb_000777_040--Hb_005779_060 Hb_058999_020 Hb_058999_020 Hb_000777_040--Hb_058999_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6707 9.21172 11.7691 17.3157 23.2382 23.8329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4326 24.7139 24.7461 11.6095 20.1522

CAGE analysis