Hb_000173_340

Information

Type -
Description -
Location Contig173: 280366-281619
Sequence    

Annotation

kegg
ID rcu:RCOM_0678400
description hypothetical protein
nr
ID KDP40077.1
description hypothetical protein JCGZ_02075 [Jatropha curcas]
swissprot
ID Q8GXC7
description F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1
trembl
ID A0A067KV99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02075 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein at3g06240-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16463: 280381-281752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_340 0.0 - - hypothetical protein JCGZ_02075 [Jatropha curcas]
2 Hb_000347_200 0.0581304241 - - lsm1, putative [Ricinus communis]
3 Hb_000700_110 0.0849729243 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_005117_010 0.0996903279 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
5 Hb_001898_220 0.1003242436 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
6 Hb_000914_070 0.1019240645 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
7 Hb_000000_250 0.1037908389 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
8 Hb_001454_140 0.1042103844 - - protein arginine n-methyltransferase, putative [Ricinus communis]
9 Hb_012305_050 0.1044066145 - - unnamed protein product [Coffea canephora]
10 Hb_154648_010 0.1055963277 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
11 Hb_006949_040 0.1056347157 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_000953_020 0.1056818545 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
13 Hb_006332_010 0.1060014646 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
14 Hb_001789_090 0.1079256467 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
15 Hb_006922_110 0.1099373961 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
16 Hb_003092_030 0.1101603715 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
17 Hb_148644_010 0.1109140199 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
18 Hb_000245_130 0.1111050095 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
19 Hb_004976_030 0.1116995181 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
20 Hb_000041_050 0.1120708028 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_000173_340 Hb_000173_340 Hb_000347_200 Hb_000347_200 Hb_000173_340--Hb_000347_200 Hb_000700_110 Hb_000700_110 Hb_000173_340--Hb_000700_110 Hb_005117_010 Hb_005117_010 Hb_000173_340--Hb_005117_010 Hb_001898_220 Hb_001898_220 Hb_000173_340--Hb_001898_220 Hb_000914_070 Hb_000914_070 Hb_000173_340--Hb_000914_070 Hb_000000_250 Hb_000000_250 Hb_000173_340--Hb_000000_250 Hb_000347_200--Hb_000700_110 Hb_006198_080 Hb_006198_080 Hb_000347_200--Hb_006198_080 Hb_003092_030 Hb_003092_030 Hb_000347_200--Hb_003092_030 Hb_012305_050 Hb_012305_050 Hb_000347_200--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_000347_200--Hb_000024_080 Hb_148644_010 Hb_148644_010 Hb_000700_110--Hb_148644_010 Hb_000700_110--Hb_003092_030 Hb_000041_050 Hb_000041_050 Hb_000700_110--Hb_000041_050 Hb_000700_110--Hb_006198_080 Hb_002477_330 Hb_002477_330 Hb_000700_110--Hb_002477_330 Hb_011671_220 Hb_011671_220 Hb_005117_010--Hb_011671_220 Hb_000230_540 Hb_000230_540 Hb_005117_010--Hb_000230_540 Hb_004055_140 Hb_004055_140 Hb_005117_010--Hb_004055_140 Hb_006641_010 Hb_006641_010 Hb_005117_010--Hb_006641_010 Hb_010436_060 Hb_010436_060 Hb_005117_010--Hb_010436_060 Hb_005117_010--Hb_000914_070 Hb_001635_060 Hb_001635_060 Hb_001898_220--Hb_001635_060 Hb_001898_220--Hb_000000_250 Hb_093084_050 Hb_093084_050 Hb_001898_220--Hb_093084_050 Hb_189003_080 Hb_189003_080 Hb_001898_220--Hb_189003_080 Hb_002026_180 Hb_002026_180 Hb_001898_220--Hb_002026_180 Hb_001898_220--Hb_000041_050 Hb_000364_150 Hb_000364_150 Hb_000914_070--Hb_000364_150 Hb_012490_040 Hb_012490_040 Hb_000914_070--Hb_012490_040 Hb_001266_080 Hb_001266_080 Hb_000914_070--Hb_001266_080 Hb_000914_070--Hb_000347_200 Hb_000914_070--Hb_004055_140 Hb_154648_010 Hb_154648_010 Hb_000000_250--Hb_154648_010 Hb_000086_400 Hb_000086_400 Hb_000000_250--Hb_000086_400 Hb_006922_110 Hb_006922_110 Hb_000000_250--Hb_006922_110 Hb_000000_250--Hb_189003_080 Hb_003996_020 Hb_003996_020 Hb_000000_250--Hb_003996_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0394 13.0653 2.56409 12.3237 11.6665 38.1118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9831 23.046 27.1571 10.6186 6.8478

CAGE analysis