Hb_000173_370

Information

Type transcription factor
Description TF Family: FAR1
Location Contig173: 290529-293484
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20380g
description POPTRDRAFT_803896; hypothetical protein
nr
ID XP_012069480.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
swissprot
ID Q9M8J3
description Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1
trembl
ID A0A067L6E7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02073 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 7-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_370 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
2 Hb_002025_140 0.0776211158 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
3 Hb_004032_460 0.0817595776 - - -
4 Hb_000088_180 0.0861983077 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
5 Hb_004531_090 0.0875622212 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
6 Hb_000573_040 0.0897859972 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
7 Hb_000173_210 0.0940241061 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
8 Hb_002728_020 0.0947344587 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
9 Hb_060437_010 0.0957063131 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
10 Hb_000300_540 0.0968855559 - - PREDICTED: syntaxin-132 [Jatropha curcas]
11 Hb_012807_120 0.0994363424 - - metal ion binding protein, putative [Ricinus communis]
12 Hb_000491_080 0.1005563421 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
13 Hb_000392_280 0.1017950419 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
14 Hb_000365_350 0.1027004937 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
15 Hb_001034_020 0.1034380778 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
16 Hb_000025_750 0.1096485205 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
17 Hb_000849_150 0.1124422109 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
18 Hb_000050_120 0.113964292 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
19 Hb_160818_010 0.1149330376 - - -
20 Hb_005725_070 0.116145099 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000173_370 Hb_000173_370 Hb_002025_140 Hb_002025_140 Hb_000173_370--Hb_002025_140 Hb_004032_460 Hb_004032_460 Hb_000173_370--Hb_004032_460 Hb_000088_180 Hb_000088_180 Hb_000173_370--Hb_000088_180 Hb_004531_090 Hb_004531_090 Hb_000173_370--Hb_004531_090 Hb_000573_040 Hb_000573_040 Hb_000173_370--Hb_000573_040 Hb_000173_210 Hb_000173_210 Hb_000173_370--Hb_000173_210 Hb_002025_140--Hb_000573_040 Hb_002025_140--Hb_004531_090 Hb_000165_130 Hb_000165_130 Hb_002025_140--Hb_000165_130 Hb_003216_110 Hb_003216_110 Hb_002025_140--Hb_003216_110 Hb_004032_350 Hb_004032_350 Hb_002025_140--Hb_004032_350 Hb_004032_460--Hb_000088_180 Hb_000300_540 Hb_000300_540 Hb_004032_460--Hb_000300_540 Hb_000365_350 Hb_000365_350 Hb_004032_460--Hb_000365_350 Hb_000849_150 Hb_000849_150 Hb_004032_460--Hb_000849_150 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340 Hb_000320_440 Hb_000320_440 Hb_000088_180--Hb_000320_440 Hb_000260_700 Hb_000260_700 Hb_000088_180--Hb_000260_700 Hb_000088_180--Hb_000365_350 Hb_001776_080 Hb_001776_080 Hb_000088_180--Hb_001776_080 Hb_000779_040 Hb_000779_040 Hb_004531_090--Hb_000779_040 Hb_000291_120 Hb_000291_120 Hb_004531_090--Hb_000291_120 Hb_000211_090 Hb_000211_090 Hb_004531_090--Hb_000211_090 Hb_004531_090--Hb_000573_040 Hb_001034_020 Hb_001034_020 Hb_004531_090--Hb_001034_020 Hb_000684_180 Hb_000684_180 Hb_000573_040--Hb_000684_180 Hb_000134_360 Hb_000134_360 Hb_000573_040--Hb_000134_360 Hb_000212_280 Hb_000212_280 Hb_000573_040--Hb_000212_280 Hb_005028_010 Hb_005028_010 Hb_000573_040--Hb_005028_010 Hb_000392_280 Hb_000392_280 Hb_000173_210--Hb_000392_280 Hb_002897_040 Hb_002897_040 Hb_000173_210--Hb_002897_040 Hb_000619_070 Hb_000619_070 Hb_000173_210--Hb_000619_070 Hb_006631_010 Hb_006631_010 Hb_000173_210--Hb_006631_010 Hb_035360_010 Hb_035360_010 Hb_000173_210--Hb_035360_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.4666 18.6779 8.11942 4.64743 114.566 70.8431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.0347 13.371 24.7613 10.1992 6.10781

CAGE analysis