Hb_000173_380

Information

Type transcription factor
Description TF Family: FAR1
Location Contig173: 295777-298171
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0008270
description protein far1-related sequence 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_380 0.0 transcription factor TF Family: FAR1 -
2 Hb_002002_020 0.1395344848 - - Phosphoprotein phosphatase isoform 3 [Theobroma cacao]
3 Hb_000077_080 0.1478238642 - - PREDICTED: uncharacterized protein LOC105646929 [Jatropha curcas]
4 Hb_002400_070 0.1492326094 transcription factor TF Family: AUX/IAA PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Jatropha curcas]
5 Hb_000237_230 0.1742505399 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
6 Hb_002843_100 0.1743921616 - - -
7 Hb_000186_040 0.175522084 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002405_020 0.1763629156 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
9 Hb_000703_090 0.1807960672 - - PREDICTED: 14-3-3-like protein D [Cucumis sativus]
10 Hb_002149_040 0.181937112 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000392_070 0.1830977959 - - catalytic, putative [Ricinus communis]
12 Hb_015401_020 0.1844166053 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_000261_040 0.1861599255 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
14 Hb_000732_020 0.186355678 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
15 Hb_050964_020 0.187374427 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
16 Hb_000196_040 0.1880409246 - - Patellin-3, putative [Ricinus communis]
17 Hb_000849_070 0.1892207678 - - PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
18 Hb_004108_020 0.1901575854 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Populus euphratica]
19 Hb_001655_070 0.1905738392 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
20 Hb_000920_040 0.1925494456 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]

Gene co-expression network

sample Hb_000173_380 Hb_000173_380 Hb_002002_020 Hb_002002_020 Hb_000173_380--Hb_002002_020 Hb_000077_080 Hb_000077_080 Hb_000173_380--Hb_000077_080 Hb_002400_070 Hb_002400_070 Hb_000173_380--Hb_002400_070 Hb_000237_230 Hb_000237_230 Hb_000173_380--Hb_000237_230 Hb_002843_100 Hb_002843_100 Hb_000173_380--Hb_002843_100 Hb_000186_040 Hb_000186_040 Hb_000173_380--Hb_000186_040 Hb_183510_010 Hb_183510_010 Hb_002002_020--Hb_183510_010 Hb_000322_170 Hb_000322_170 Hb_002002_020--Hb_000322_170 Hb_015401_020 Hb_015401_020 Hb_002002_020--Hb_015401_020 Hb_002002_020--Hb_002843_100 Hb_001178_060 Hb_001178_060 Hb_002002_020--Hb_001178_060 Hb_000174_200 Hb_000174_200 Hb_002002_020--Hb_000174_200 Hb_000798_060 Hb_000798_060 Hb_000077_080--Hb_000798_060 Hb_008725_250 Hb_008725_250 Hb_000077_080--Hb_008725_250 Hb_000703_090 Hb_000703_090 Hb_000077_080--Hb_000703_090 Hb_005489_130 Hb_005489_130 Hb_000077_080--Hb_005489_130 Hb_008959_030 Hb_008959_030 Hb_000077_080--Hb_008959_030 Hb_000116_110 Hb_000116_110 Hb_000077_080--Hb_000116_110 Hb_001655_070 Hb_001655_070 Hb_002400_070--Hb_001655_070 Hb_000849_070 Hb_000849_070 Hb_002400_070--Hb_000849_070 Hb_002400_070--Hb_000703_090 Hb_003656_130 Hb_003656_130 Hb_002400_070--Hb_003656_130 Hb_050455_010 Hb_050455_010 Hb_002400_070--Hb_050455_010 Hb_123475_010 Hb_123475_010 Hb_002400_070--Hb_123475_010 Hb_000258_410 Hb_000258_410 Hb_000237_230--Hb_000258_410 Hb_000732_020 Hb_000732_020 Hb_000237_230--Hb_000732_020 Hb_000814_090 Hb_000814_090 Hb_000237_230--Hb_000814_090 Hb_000176_110 Hb_000176_110 Hb_000237_230--Hb_000176_110 Hb_002955_010 Hb_002955_010 Hb_000237_230--Hb_002955_010 Hb_000645_150 Hb_000645_150 Hb_000237_230--Hb_000645_150 Hb_001633_100 Hb_001633_100 Hb_002843_100--Hb_001633_100 Hb_001754_170 Hb_001754_170 Hb_002843_100--Hb_001754_170 Hb_002400_390 Hb_002400_390 Hb_002843_100--Hb_002400_390 Hb_002405_020 Hb_002405_020 Hb_002843_100--Hb_002405_020 Hb_003581_110 Hb_003581_110 Hb_002843_100--Hb_003581_110 Hb_002270_010 Hb_002270_010 Hb_000186_040--Hb_002270_010 Hb_001975_070 Hb_001975_070 Hb_000186_040--Hb_001975_070 Hb_011930_010 Hb_011930_010 Hb_000186_040--Hb_011930_010 Hb_005147_110 Hb_005147_110 Hb_000186_040--Hb_005147_110 Hb_000076_290 Hb_000076_290 Hb_000186_040--Hb_000076_290 Hb_001341_030 Hb_001341_030 Hb_000186_040--Hb_001341_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.282478 0.144125 0 0.157231 0.33658 0.260742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.185253 0.145676 0.0883574 0.0588336 0

CAGE analysis