Hb_000173_400

Information

Type -
Description -
Location Contig173: 300627-302594
Sequence    

Annotation

kegg
ID tcc:TCM_021066
description Tetratricopeptide repeat-like superfamily protein, putative isoform 1
nr
ID XP_012069479.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
swissprot
ID Q8GYM2
description Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2
trembl
ID A0A067L7K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02072 PE=4 SV=1
Gene Ontology
ID GO:0006259
description pentatricopeptide repeat-containing protein at5g18950

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16467: 300981-301810 , PASA_asmbl_16468: 301860-302866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_400 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
2 Hb_000953_010 0.0694938547 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
3 Hb_004055_040 0.0810851841 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
4 Hb_004734_060 0.084098861 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
5 Hb_002928_060 0.0855952053 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
6 Hb_000803_190 0.087082326 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
7 Hb_001771_130 0.0889605858 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
8 Hb_010710_010 0.0906093486 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
9 Hb_000836_360 0.091675508 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
10 Hb_033152_080 0.0926049762 - - RNA-binding protein Nova-1, putative [Ricinus communis]
11 Hb_000184_130 0.093514746 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
12 Hb_001871_040 0.0951844203 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
13 Hb_005839_120 0.0954964452 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
14 Hb_000230_080 0.0964424859 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
15 Hb_002341_030 0.0967498155 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
16 Hb_005324_010 0.0976079581 - - Chaperone protein dnaJ, putative [Ricinus communis]
17 Hb_000011_080 0.0979111607 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
18 Hb_004204_080 0.0991651487 - - diacylglycerol kinase, theta, putative [Ricinus communis]
19 Hb_000627_080 0.1040597966 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
20 Hb_110364_010 0.1045182484 - - gamma-tubulin complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_000173_400 Hb_000173_400 Hb_000953_010 Hb_000953_010 Hb_000173_400--Hb_000953_010 Hb_004055_040 Hb_004055_040 Hb_000173_400--Hb_004055_040 Hb_004734_060 Hb_004734_060 Hb_000173_400--Hb_004734_060 Hb_002928_060 Hb_002928_060 Hb_000173_400--Hb_002928_060 Hb_000803_190 Hb_000803_190 Hb_000173_400--Hb_000803_190 Hb_001771_130 Hb_001771_130 Hb_000173_400--Hb_001771_130 Hb_000953_010--Hb_000803_190 Hb_000953_010--Hb_004734_060 Hb_000836_360 Hb_000836_360 Hb_000953_010--Hb_000836_360 Hb_033152_080 Hb_033152_080 Hb_000953_010--Hb_033152_080 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_004055_040--Hb_002928_060 Hb_005730_030 Hb_005730_030 Hb_004055_040--Hb_005730_030 Hb_001366_040 Hb_001366_040 Hb_004055_040--Hb_001366_040 Hb_001871_040 Hb_001871_040 Hb_004055_040--Hb_001871_040 Hb_000244_250 Hb_000244_250 Hb_004055_040--Hb_000244_250 Hb_000915_050 Hb_000915_050 Hb_004055_040--Hb_000915_050 Hb_004734_060--Hb_033152_080 Hb_004734_060--Hb_000803_190 Hb_000209_020 Hb_000209_020 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_004734_060--Hb_000184_130 Hb_002928_060--Hb_005730_030 Hb_002874_070 Hb_002874_070 Hb_002928_060--Hb_002874_070 Hb_000230_330 Hb_000230_330 Hb_002928_060--Hb_000230_330 Hb_002928_060--Hb_001871_040 Hb_003362_040 Hb_003362_040 Hb_002928_060--Hb_003362_040 Hb_000803_190--Hb_033152_080 Hb_001797_050 Hb_001797_050 Hb_000803_190--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_000803_190--Hb_005188_050 Hb_000207_390 Hb_000207_390 Hb_000803_190--Hb_000207_390 Hb_001437_180 Hb_001437_180 Hb_001771_130--Hb_001437_180 Hb_000011_080 Hb_000011_080 Hb_001771_130--Hb_000011_080 Hb_001771_130--Hb_001871_040 Hb_001771_130--Hb_004734_060 Hb_001943_010 Hb_001943_010 Hb_001771_130--Hb_001943_010 Hb_000386_030 Hb_000386_030 Hb_001771_130--Hb_000386_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.9512 31.1879 8.50191 8.78627 34.8828 68.5897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2169 17.5539 42.7651 16.6959 7.29381

CAGE analysis