Hb_000173_410

Information

Type -
Description -
Location Contig173: 304500-306381
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20370g
description POPTRDRAFT_814068; hypothetical protein
nr
ID XP_012069478.1
description PREDICTED: BI1-like protein [Jatropha curcas]
swissprot
ID Q94A20
description BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1
trembl
ID A0A067KYK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02071 PE=4 SV=1
Gene Ontology
ID GO:0005623
description bi1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16469: 304447-306366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_410 0.0 - - PREDICTED: BI1-like protein [Jatropha curcas]
2 Hb_000454_090 0.0406718095 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
3 Hb_000252_100 0.0455831668 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
4 Hb_000220_100 0.0580289904 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
5 Hb_000359_060 0.0599547421 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
6 Hb_005765_050 0.0614469542 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
7 Hb_004078_040 0.0644217843 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
8 Hb_007218_120 0.0674503439 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
9 Hb_004109_220 0.0715779575 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
10 Hb_001218_030 0.0727094058 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
11 Hb_002119_130 0.0737171175 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
12 Hb_149985_010 0.0753202693 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
13 Hb_000140_380 0.0761858096 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
14 Hb_011344_190 0.0775823411 - - PREDICTED: maspardin [Jatropha curcas]
15 Hb_003305_040 0.0789986864 - - AP47/50p mRNA family protein [Populus trichocarpa]
16 Hb_004800_100 0.0796265416 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000060_050 0.0796290514 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
18 Hb_000890_150 0.0797156884 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
19 Hb_000393_020 0.080526471 - - lipid binding protein, putative [Ricinus communis]
20 Hb_000608_050 0.0827865149 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000173_410 Hb_000173_410 Hb_000454_090 Hb_000454_090 Hb_000173_410--Hb_000454_090 Hb_000252_100 Hb_000252_100 Hb_000173_410--Hb_000252_100 Hb_000220_100 Hb_000220_100 Hb_000173_410--Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000173_410--Hb_000359_060 Hb_005765_050 Hb_005765_050 Hb_000173_410--Hb_005765_050 Hb_004078_040 Hb_004078_040 Hb_000173_410--Hb_004078_040 Hb_000454_090--Hb_000252_100 Hb_000454_090--Hb_004078_040 Hb_000454_090--Hb_000220_100 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_000454_090--Hb_005765_050 Hb_003305_040 Hb_003305_040 Hb_000252_100--Hb_003305_040 Hb_000140_380 Hb_000140_380 Hb_000252_100--Hb_000140_380 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_000505_150 Hb_000505_150 Hb_000252_100--Hb_000505_150 Hb_000220_100--Hb_000359_060 Hb_002045_070 Hb_002045_070 Hb_000220_100--Hb_002045_070 Hb_000608_050 Hb_000608_050 Hb_000220_100--Hb_000608_050 Hb_033594_080 Hb_033594_080 Hb_000220_100--Hb_033594_080 Hb_000890_150 Hb_000890_150 Hb_000359_060--Hb_000890_150 Hb_011218_090 Hb_011218_090 Hb_000359_060--Hb_011218_090 Hb_149985_010 Hb_149985_010 Hb_000359_060--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_000359_060--Hb_168978_010 Hb_005765_050--Hb_000608_050 Hb_001300_150 Hb_001300_150 Hb_005765_050--Hb_001300_150 Hb_008841_020 Hb_008841_020 Hb_005765_050--Hb_008841_020 Hb_005765_050--Hb_004078_040 Hb_004078_040--Hb_000359_060 Hb_004078_040--Hb_000393_020 Hb_004109_220 Hb_004109_220 Hb_004078_040--Hb_004109_220 Hb_000928_070 Hb_000928_070 Hb_004078_040--Hb_000928_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.4081 43.7931 57.8617 111.954 37.9666 37.3966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.7396 86.016 104.114 73.9347 61.4984

CAGE analysis