Hb_000173_510

Information

Type -
Description -
Location Contig173: 376561-382188
Sequence    

Annotation

kegg
ID rcu:RCOM_0678700
description hypothetical protein
nr
ID XP_012069473.1
description PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
swissprot
ID Q8W0Z6
description AP-5 complex subunit mu OS=Arabidopsis thaliana GN=AP5M PE=2 SV=1
trembl
ID A0A067L7J6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02067 PE=4 SV=1
Gene Ontology
ID GO:0030131
description ap-5 complex subunit mu

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16482: 377549-379590 , PASA_asmbl_16483: 379643-382088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_510 0.0 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
2 Hb_003428_070 0.063853611 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
3 Hb_000567_010 0.0642302465 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
4 Hb_000768_110 0.065025328 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
5 Hb_000160_040 0.0650282096 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
6 Hb_000283_070 0.0652165146 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
7 Hb_000059_150 0.0680742102 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
8 Hb_010193_050 0.068279244 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000510_310 0.0683523565 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
10 Hb_000743_040 0.0684123922 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
11 Hb_008864_110 0.0690413548 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
12 Hb_004102_140 0.0709421532 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000347_130 0.0710065725 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
14 Hb_002304_090 0.0713800853 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
15 Hb_010381_060 0.072845576 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
16 Hb_000320_200 0.0746400475 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
17 Hb_009620_040 0.0746825203 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
18 Hb_004162_280 0.075007481 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
19 Hb_009627_010 0.0763286464 - - Protein dom-3, putative [Ricinus communis]
20 Hb_001797_050 0.0765506095 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000173_510 Hb_000173_510 Hb_003428_070 Hb_003428_070 Hb_000173_510--Hb_003428_070 Hb_000567_010 Hb_000567_010 Hb_000173_510--Hb_000567_010 Hb_000768_110 Hb_000768_110 Hb_000173_510--Hb_000768_110 Hb_000160_040 Hb_000160_040 Hb_000173_510--Hb_000160_040 Hb_000283_070 Hb_000283_070 Hb_000173_510--Hb_000283_070 Hb_000059_150 Hb_000059_150 Hb_000173_510--Hb_000059_150 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_005494_020 Hb_005494_020 Hb_000567_010--Hb_005494_020 Hb_147737_010 Hb_147737_010 Hb_000567_010--Hb_147737_010 Hb_000567_010--Hb_000768_110 Hb_000331_190 Hb_000331_190 Hb_000567_010--Hb_000331_190 Hb_008159_020 Hb_008159_020 Hb_000768_110--Hb_008159_020 Hb_000768_110--Hb_000160_040 Hb_000768_110--Hb_010193_050 Hb_005914_060 Hb_005914_060 Hb_000768_110--Hb_005914_060 Hb_106371_010 Hb_106371_010 Hb_000160_040--Hb_106371_010 Hb_009627_010 Hb_009627_010 Hb_000160_040--Hb_009627_010 Hb_009620_040 Hb_009620_040 Hb_000160_040--Hb_009620_040 Hb_003090_080 Hb_003090_080 Hb_000160_040--Hb_003090_080 Hb_000107_500 Hb_000107_500 Hb_000283_070--Hb_000107_500 Hb_000645_120 Hb_000645_120 Hb_000283_070--Hb_000645_120 Hb_006831_110 Hb_006831_110 Hb_000283_070--Hb_006831_110 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050 Hb_000059_150--Hb_000743_040 Hb_002273_130 Hb_002273_130 Hb_000059_150--Hb_002273_130 Hb_000600_070 Hb_000600_070 Hb_000059_150--Hb_000600_070 Hb_010381_060 Hb_010381_060 Hb_000059_150--Hb_010381_060 Hb_004450_010 Hb_004450_010 Hb_000059_150--Hb_004450_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7224 10.7455 6.11231 8.18236 21.2594 23.9884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.46241 9.22561 10.5023 10.3362 6.44616

CAGE analysis