Hb_000174_020

Information

Type -
Description -
Location Contig174: 38978-40052
Sequence    

Annotation

kegg
ID rcu:RCOM_0739230
description amidase, putative (EC:3.5.1.4)
nr
ID XP_012084367.1
description PREDICTED: putative amidase C869.01 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19575 PE=4 SV=1
Gene Ontology
ID GO:0003824
description amidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_020 0.0 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
2 Hb_000270_550 0.1112403629 - - -
3 Hb_005900_020 0.1442179817 - - -
4 Hb_003582_010 0.1484555365 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
5 Hb_007075_020 0.1489487861 transcription factor TF Family: TRAF ankyrin repeat family protein [Populus trichocarpa]
6 Hb_066350_010 0.1498594072 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
7 Hb_008385_010 0.1573213058 - - sulfate transporter, putative [Ricinus communis]
8 Hb_015026_010 0.157469898 - - -
9 Hb_000501_090 0.1581233761 - - -
10 Hb_012879_010 0.1624051063 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001645_100 0.1636752781 - - -
12 Hb_000146_100 0.1663292987 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001013_060 0.1676060269 - - -
14 Hb_062226_080 0.1707115383 - - -
15 Hb_179118_010 0.1726628831 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
16 Hb_002267_040 0.1728950896 - - -
17 Hb_005888_040 0.1746740978 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
18 Hb_000840_220 0.179381486 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
19 Hb_004590_010 0.1808874074 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
20 Hb_000658_020 0.1809765409 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_000174_020 Hb_000174_020 Hb_000270_550 Hb_000270_550 Hb_000174_020--Hb_000270_550 Hb_005900_020 Hb_005900_020 Hb_000174_020--Hb_005900_020 Hb_003582_010 Hb_003582_010 Hb_000174_020--Hb_003582_010 Hb_007075_020 Hb_007075_020 Hb_000174_020--Hb_007075_020 Hb_066350_010 Hb_066350_010 Hb_000174_020--Hb_066350_010 Hb_008385_010 Hb_008385_010 Hb_000174_020--Hb_008385_010 Hb_001369_530 Hb_001369_530 Hb_000270_550--Hb_001369_530 Hb_179118_010 Hb_179118_010 Hb_000270_550--Hb_179118_010 Hb_000510_210 Hb_000510_210 Hb_000270_550--Hb_000510_210 Hb_106728_020 Hb_106728_020 Hb_000270_550--Hb_106728_020 Hb_012879_010 Hb_012879_010 Hb_000270_550--Hb_012879_010 Hb_005900_020--Hb_066350_010 Hb_148914_020 Hb_148914_020 Hb_005900_020--Hb_148914_020 Hb_005900_020--Hb_179118_010 Hb_004590_010 Hb_004590_010 Hb_005900_020--Hb_004590_010 Hb_021443_020 Hb_021443_020 Hb_005900_020--Hb_021443_020 Hb_035006_010 Hb_035006_010 Hb_005900_020--Hb_035006_010 Hb_003582_010--Hb_008385_010 Hb_001013_070 Hb_001013_070 Hb_003582_010--Hb_001013_070 Hb_002511_050 Hb_002511_050 Hb_003582_010--Hb_002511_050 Hb_000705_070 Hb_000705_070 Hb_003582_010--Hb_000705_070 Hb_001322_010 Hb_001322_010 Hb_003582_010--Hb_001322_010 Hb_001013_060 Hb_001013_060 Hb_003582_010--Hb_001013_060 Hb_007075_020--Hb_021443_020 Hb_001227_010 Hb_001227_010 Hb_007075_020--Hb_001227_010 Hb_007075_020--Hb_035006_010 Hb_006890_050 Hb_006890_050 Hb_007075_020--Hb_006890_050 Hb_103149_010 Hb_103149_010 Hb_007075_020--Hb_103149_010 Hb_002267_040 Hb_002267_040 Hb_066350_010--Hb_002267_040 Hb_015026_010 Hb_015026_010 Hb_066350_010--Hb_015026_010 Hb_062226_080 Hb_062226_080 Hb_066350_010--Hb_062226_080 Hb_005888_040 Hb_005888_040 Hb_066350_010--Hb_005888_040 Hb_009252_110 Hb_009252_110 Hb_066350_010--Hb_009252_110 Hb_000501_090 Hb_000501_090 Hb_066350_010--Hb_000501_090 Hb_008385_010--Hb_002511_050 Hb_001645_100 Hb_001645_100 Hb_008385_010--Hb_001645_100 Hb_008385_010--Hb_001013_070 Hb_008385_010--Hb_005900_020 Hb_050229_030 Hb_050229_030 Hb_008385_010--Hb_050229_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0308163 0.259539 0.0195347 0.670369 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.143115 0

CAGE analysis