Hb_000174_030

Information

Type -
Description -
Location Contig174: 49616-61798
Sequence    

Annotation

kegg
ID rcu:RCOM_1077370
description hypothetical protein
nr
ID XP_002514796.1
description hypothetical protein RCOM_1077370 [Ricinus communis]
swissprot
ID Q9SCX7
description Inactive disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=3 SV=1
trembl
ID B9RM27
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1077370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_030 0.0 - - hypothetical protein RCOM_1077370 [Ricinus communis]
2 Hb_002871_190 0.0808807727 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
3 Hb_002540_080 0.0966162337 - - cysteine-type peptidase, putative [Ricinus communis]
4 Hb_001604_060 0.0974149885 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
5 Hb_001268_420 0.1085943097 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
6 Hb_001318_260 0.1117504605 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
7 Hb_011689_120 0.1133052658 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
8 Hb_004225_080 0.1158350158 - - -
9 Hb_000959_350 0.1159438628 - - PREDICTED: uncharacterized protein LOC105636607 [Jatropha curcas]
10 Hb_011716_130 0.1168386636 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
11 Hb_003849_150 0.1180769863 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
12 Hb_028872_080 0.1184931899 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
13 Hb_000853_190 0.1191103569 - - mitochondrial carrier protein, putative [Ricinus communis]
14 Hb_003082_030 0.1198326568 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
15 Hb_026889_030 0.1210094455 - - protein with unknown function [Ricinus communis]
16 Hb_002872_050 0.1231092197 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
17 Hb_017225_020 0.1239346694 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
18 Hb_003622_030 0.1245285397 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
19 Hb_021576_030 0.1247417712 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
20 Hb_001946_140 0.1269577346 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000174_030 Hb_000174_030 Hb_002871_190 Hb_002871_190 Hb_000174_030--Hb_002871_190 Hb_002540_080 Hb_002540_080 Hb_000174_030--Hb_002540_080 Hb_001604_060 Hb_001604_060 Hb_000174_030--Hb_001604_060 Hb_001268_420 Hb_001268_420 Hb_000174_030--Hb_001268_420 Hb_001318_260 Hb_001318_260 Hb_000174_030--Hb_001318_260 Hb_011689_120 Hb_011689_120 Hb_000174_030--Hb_011689_120 Hb_003728_060 Hb_003728_060 Hb_002871_190--Hb_003728_060 Hb_026889_030 Hb_026889_030 Hb_002871_190--Hb_026889_030 Hb_050514_010 Hb_050514_010 Hb_002871_190--Hb_050514_010 Hb_010361_010 Hb_010361_010 Hb_002871_190--Hb_010361_010 Hb_002600_090 Hb_002600_090 Hb_002871_190--Hb_002600_090 Hb_000827_050 Hb_000827_050 Hb_002871_190--Hb_000827_050 Hb_003622_030 Hb_003622_030 Hb_002540_080--Hb_003622_030 Hb_000676_390 Hb_000676_390 Hb_002540_080--Hb_000676_390 Hb_002540_080--Hb_026889_030 Hb_012799_170 Hb_012799_170 Hb_002540_080--Hb_012799_170 Hb_000160_180 Hb_000160_180 Hb_002540_080--Hb_000160_180 Hb_002540_080--Hb_001318_260 Hb_001604_060--Hb_001268_420 Hb_000329_200 Hb_000329_200 Hb_001604_060--Hb_000329_200 Hb_017225_020 Hb_017225_020 Hb_001604_060--Hb_017225_020 Hb_004195_270 Hb_004195_270 Hb_001604_060--Hb_004195_270 Hb_118419_010 Hb_118419_010 Hb_001604_060--Hb_118419_010 Hb_028872_080 Hb_028872_080 Hb_001604_060--Hb_028872_080 Hb_001427_200 Hb_001427_200 Hb_001268_420--Hb_001427_200 Hb_032264_070 Hb_032264_070 Hb_001268_420--Hb_032264_070 Hb_001268_420--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_001268_420--Hb_001105_030 Hb_001268_420--Hb_028872_080 Hb_018133_020 Hb_018133_020 Hb_001318_260--Hb_018133_020 Hb_131181_010 Hb_131181_010 Hb_001318_260--Hb_131181_010 Hb_001279_080 Hb_001279_080 Hb_001318_260--Hb_001279_080 Hb_002872_050 Hb_002872_050 Hb_001318_260--Hb_002872_050 Hb_001318_260--Hb_000160_180 Hb_006846_150 Hb_006846_150 Hb_011689_120--Hb_006846_150 Hb_001322_110 Hb_001322_110 Hb_011689_120--Hb_001322_110 Hb_000403_070 Hb_000403_070 Hb_011689_120--Hb_000403_070 Hb_011689_120--Hb_002872_050 Hb_000811_070 Hb_000811_070 Hb_011689_120--Hb_000811_070 Hb_011689_120--Hb_001318_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115967 0.0169355 0.189699 0.0961812 0.0541925 0.0957519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.21182 0.200004 0.189918 0.092783 0.176404

CAGE analysis