Hb_000174_070

Information

Type -
Description -
Location Contig174: 101937-118231
Sequence    

Annotation

kegg
ID rcu:RCOM_1077250
description UDP-galactose/UDP-N-acetylglucosamine transporter, putative
nr
ID XP_012085813.1
description PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
swissprot
ID Q9C5H6
description CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2 SV=1
trembl
ID A0A067K519
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18072 PE=4 SV=1
Gene Ontology
ID GO:0000139
description cmp-sialic acid transporter 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16549: 102205-103266 , PASA_asmbl_16550: 109542-110001 , PASA_asmbl_16551: 112034-117935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_070 0.0 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
2 Hb_000025_120 0.0788671764 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
3 Hb_002411_200 0.087341697 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001105_070 0.0884607202 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
5 Hb_020178_070 0.0910703559 - - Protein Z, putative [Ricinus communis]
6 Hb_000496_060 0.0915690893 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
7 Hb_014720_080 0.0918111684 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
8 Hb_157022_020 0.0923168553 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
9 Hb_000840_210 0.0942213153 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
10 Hb_003408_020 0.0950246952 - - hypothetical protein RCOM_0453040 [Ricinus communis]
11 Hb_001833_110 0.0963765345 - - conserved hypothetical protein [Ricinus communis]
12 Hb_065525_020 0.0974767566 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
13 Hb_002216_040 0.0990552287 - - PREDICTED: protein PRD1 [Jatropha curcas]
14 Hb_001248_130 0.0991511681 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
15 Hb_021650_030 0.1010350052 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
16 Hb_001195_690 0.1013781557 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
17 Hb_003052_100 0.1024139971 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_005431_010 0.1030854974 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
19 Hb_000010_460 0.1043923441 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
20 Hb_002030_040 0.1059639836 - - hypothetical protein JCGZ_18677 [Jatropha curcas]

Gene co-expression network

sample Hb_000174_070 Hb_000174_070 Hb_000025_120 Hb_000025_120 Hb_000174_070--Hb_000025_120 Hb_002411_200 Hb_002411_200 Hb_000174_070--Hb_002411_200 Hb_001105_070 Hb_001105_070 Hb_000174_070--Hb_001105_070 Hb_020178_070 Hb_020178_070 Hb_000174_070--Hb_020178_070 Hb_000496_060 Hb_000496_060 Hb_000174_070--Hb_000496_060 Hb_014720_080 Hb_014720_080 Hb_000174_070--Hb_014720_080 Hb_000025_120--Hb_000496_060 Hb_000025_120--Hb_014720_080 Hb_000347_410 Hb_000347_410 Hb_000025_120--Hb_000347_410 Hb_000025_120--Hb_001105_070 Hb_000146_020 Hb_000146_020 Hb_000025_120--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_000025_120--Hb_000834_270 Hb_021650_030 Hb_021650_030 Hb_002411_200--Hb_021650_030 Hb_000086_570 Hb_000086_570 Hb_002411_200--Hb_000086_570 Hb_000091_090 Hb_000091_090 Hb_002411_200--Hb_000091_090 Hb_002411_200--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_002411_200--Hb_001881_020 Hb_002411_200--Hb_020178_070 Hb_005431_010 Hb_005431_010 Hb_001105_070--Hb_005431_010 Hb_012053_070 Hb_012053_070 Hb_001105_070--Hb_012053_070 Hb_000987_070 Hb_000987_070 Hb_001105_070--Hb_000987_070 Hb_009773_020 Hb_009773_020 Hb_001105_070--Hb_009773_020 Hb_065525_020 Hb_065525_020 Hb_001105_070--Hb_065525_020 Hb_001248_130 Hb_001248_130 Hb_020178_070--Hb_001248_130 Hb_000567_260 Hb_000567_260 Hb_020178_070--Hb_000567_260 Hb_001671_020 Hb_001671_020 Hb_020178_070--Hb_001671_020 Hb_020178_070--Hb_001881_020 Hb_020178_070--Hb_021650_030 Hb_005432_030 Hb_005432_030 Hb_000496_060--Hb_005432_030 Hb_003175_040 Hb_003175_040 Hb_000496_060--Hb_003175_040 Hb_117134_010 Hb_117134_010 Hb_000496_060--Hb_117134_010 Hb_000496_060--Hb_014720_080 Hb_001833_110 Hb_001833_110 Hb_000496_060--Hb_001833_110 Hb_001722_100 Hb_001722_100 Hb_014720_080--Hb_001722_100 Hb_014720_080--Hb_021650_030 Hb_002540_030 Hb_002540_030 Hb_014720_080--Hb_002540_030 Hb_014720_080--Hb_000146_020 Hb_014720_080--Hb_000834_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6117 6.20407 3.61506 9.42336 11.0118 12.4929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.5634 16.6322 22.3429 10.0784 3.27731

CAGE analysis