Hb_000174_080

Information

Type -
Description -
Location Contig174: 120769-125120
Sequence    

Annotation

kegg
ID rcu:RCOM_1077240
description 4-nitrophenylphosphatase, putative (EC:3.1.3.41)
nr
ID XP_002514793.1
description 4-nitrophenylphosphatase, putative [Ricinus communis]
swissprot
ID P0DKC4
description Phosphoglycolate phosphatase 1B, chloroplastic OS=Arabidopsis thaliana GN=PGLP1B PE=1 SV=1
trembl
ID B9RM24
description 4-nitrophenylphosphatase, putative OS=Ricinus communis GN=RCOM_1077240 PE=4 SV=1
Gene Ontology
ID GO:0016791
description phosphoglycolate phosphatase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16552: 123356-123810 , PASA_asmbl_16553: 123924-124463 , PASA_asmbl_16554: 125778-127771 , PASA_asmbl_16555: 125960-127705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_080 0.0 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
2 Hb_002249_090 0.0813453459 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
3 Hb_137216_010 0.0935776485 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
4 Hb_002071_030 0.097469615 - - PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
5 Hb_003602_100 0.1053071275 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
6 Hb_007803_040 0.1069414785 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
7 Hb_000009_510 0.1090051302 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
8 Hb_002485_050 0.1118269241 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
9 Hb_000648_070 0.1182578569 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
10 Hb_002609_140 0.1189081426 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_002495_090 0.1189683261 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
12 Hb_000544_070 0.119037621 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
13 Hb_000393_040 0.1220250935 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
14 Hb_000302_230 0.1290812529 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010407_090 0.1304924169 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
16 Hb_058620_080 0.1307315918 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
17 Hb_006198_030 0.1314592557 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005977_040 0.1337275427 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
19 Hb_134949_010 0.1349081856 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
20 Hb_021531_010 0.1366379246 - - receptor-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000174_080 Hb_000174_080 Hb_002249_090 Hb_002249_090 Hb_000174_080--Hb_002249_090 Hb_137216_010 Hb_137216_010 Hb_000174_080--Hb_137216_010 Hb_002071_030 Hb_002071_030 Hb_000174_080--Hb_002071_030 Hb_003602_100 Hb_003602_100 Hb_000174_080--Hb_003602_100 Hb_007803_040 Hb_007803_040 Hb_000174_080--Hb_007803_040 Hb_000009_510 Hb_000009_510 Hb_000174_080--Hb_000009_510 Hb_002249_090--Hb_003602_100 Hb_002609_140 Hb_002609_140 Hb_002249_090--Hb_002609_140 Hb_000544_070 Hb_000544_070 Hb_002249_090--Hb_000544_070 Hb_000648_070 Hb_000648_070 Hb_002249_090--Hb_000648_070 Hb_107647_010 Hb_107647_010 Hb_002249_090--Hb_107647_010 Hb_002495_090 Hb_002495_090 Hb_137216_010--Hb_002495_090 Hb_000393_040 Hb_000393_040 Hb_137216_010--Hb_000393_040 Hb_000768_120 Hb_000768_120 Hb_137216_010--Hb_000768_120 Hb_137216_010--Hb_000009_510 Hb_000302_230 Hb_000302_230 Hb_137216_010--Hb_000302_230 Hb_134949_010 Hb_134949_010 Hb_002071_030--Hb_134949_010 Hb_001268_170 Hb_001268_170 Hb_002071_030--Hb_001268_170 Hb_002071_030--Hb_003602_100 Hb_001195_290 Hb_001195_290 Hb_002071_030--Hb_001195_290 Hb_002071_030--Hb_002249_090 Hb_003602_100--Hb_001195_290 Hb_003120_020 Hb_003120_020 Hb_003602_100--Hb_003120_020 Hb_010326_020 Hb_010326_020 Hb_003602_100--Hb_010326_020 Hb_000049_100 Hb_000049_100 Hb_003602_100--Hb_000049_100 Hb_003602_100--Hb_007803_040 Hb_002485_050 Hb_002485_050 Hb_007803_040--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_007803_040--Hb_000856_280 Hb_009393_130 Hb_009393_130 Hb_007803_040--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_007803_040--Hb_005488_190 Hb_003605_060 Hb_003605_060 Hb_007803_040--Hb_003605_060 Hb_007803_040--Hb_000544_070 Hb_006681_020 Hb_006681_020 Hb_000009_510--Hb_006681_020 Hb_000009_510--Hb_000302_230 Hb_000009_510--Hb_002485_050 Hb_006583_030 Hb_006583_030 Hb_000009_510--Hb_006583_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28244 3.00045 54.6427 11.3937 1.15925 1.1865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7213 0.957106 2.12768 0.84476 74.018

CAGE analysis