Hb_000174_090

Information

Type -
Description -
Location Contig174: 125734-127805
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18760g
description POPTRDRAFT_822351; hypothetical protein
nr
ID XP_012085816.1
description PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
swissprot
ID Q8L7S0
description Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=1 SV=3
trembl
ID A0A067JSH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18074 PE=4 SV=1
Gene Ontology
ID GO:0008234
description probable ubiquitin-like-specific protease 2a isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16554: 125778-127771 , PASA_asmbl_16555: 125960-127705
cDNA
(Sanger)
(ID:Location)		 024_M18.ab1: 126359-127769

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_090 0.0 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
2 Hb_000832_140 0.0529087511 - - actin depolymerizing factor 4 [Hevea brasiliensis]
3 Hb_002449_020 0.0604959062 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
4 Hb_000926_250 0.0626799138 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
5 Hb_002078_150 0.070658806 - - protein with unknown function [Ricinus communis]
6 Hb_001477_110 0.0736421969 - - prohibitin, putative [Ricinus communis]
7 Hb_033834_040 0.0737146093 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000617_020 0.0758231489 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
9 Hb_000613_140 0.0774238112 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
10 Hb_001184_090 0.0782884866 - - PREDICTED: TIP41-like protein [Jatropha curcas]
11 Hb_000103_560 0.0784591543 - - ADP-ribosylation factor, putative [Ricinus communis]
12 Hb_000529_190 0.079073381 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
13 Hb_000007_100 0.0797064271 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
14 Hb_001008_060 0.0804751378 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
15 Hb_063716_050 0.0815792316 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
16 Hb_001377_290 0.0818728011 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
17 Hb_000103_090 0.083555455 - - PREDICTED: protein RDM1 [Jatropha curcas]
18 Hb_001811_050 0.0844416583 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
19 Hb_003615_010 0.0847898047 - - 60S ribosomal protein L8, putative [Ricinus communis]
20 Hb_002214_040 0.0855448719 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_000174_090 Hb_000174_090 Hb_000832_140 Hb_000832_140 Hb_000174_090--Hb_000832_140 Hb_002449_020 Hb_002449_020 Hb_000174_090--Hb_002449_020 Hb_000926_250 Hb_000926_250 Hb_000174_090--Hb_000926_250 Hb_002078_150 Hb_002078_150 Hb_000174_090--Hb_002078_150 Hb_001477_110 Hb_001477_110 Hb_000174_090--Hb_001477_110 Hb_033834_040 Hb_033834_040 Hb_000174_090--Hb_033834_040 Hb_002214_040 Hb_002214_040 Hb_000832_140--Hb_002214_040 Hb_003050_080 Hb_003050_080 Hb_000832_140--Hb_003050_080 Hb_000103_560 Hb_000103_560 Hb_000832_140--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_000832_140--Hb_063716_050 Hb_000529_190 Hb_000529_190 Hb_000832_140--Hb_000529_190 Hb_003032_040 Hb_003032_040 Hb_002449_020--Hb_003032_040 Hb_002449_020--Hb_000832_140 Hb_002449_020--Hb_000529_190 Hb_001811_050 Hb_001811_050 Hb_002449_020--Hb_001811_050 Hb_001771_090 Hb_001771_090 Hb_002449_020--Hb_001771_090 Hb_000007_100 Hb_000007_100 Hb_000926_250--Hb_000007_100 Hb_000926_250--Hb_033834_040 Hb_001604_080 Hb_001604_080 Hb_000926_250--Hb_001604_080 Hb_002226_070 Hb_002226_070 Hb_000926_250--Hb_002226_070 Hb_002284_240 Hb_002284_240 Hb_000926_250--Hb_002284_240 Hb_000926_250--Hb_063716_050 Hb_004128_190 Hb_004128_190 Hb_002078_150--Hb_004128_190 Hb_002078_150--Hb_000103_560 Hb_000398_180 Hb_000398_180 Hb_002078_150--Hb_000398_180 Hb_003847_080 Hb_003847_080 Hb_002078_150--Hb_003847_080 Hb_001377_290 Hb_001377_290 Hb_002078_150--Hb_001377_290 Hb_004545_060 Hb_004545_060 Hb_002078_150--Hb_004545_060 Hb_001824_070 Hb_001824_070 Hb_001477_110--Hb_001824_070 Hb_000380_190 Hb_000380_190 Hb_001477_110--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001477_110--Hb_002311_350 Hb_001235_210 Hb_001235_210 Hb_001477_110--Hb_001235_210 Hb_001477_110--Hb_000832_140 Hb_001477_110--Hb_000007_100 Hb_033834_040--Hb_002226_070 Hb_000103_090 Hb_000103_090 Hb_033834_040--Hb_000103_090 Hb_004032_010 Hb_004032_010 Hb_033834_040--Hb_004032_010 Hb_002183_090 Hb_002183_090 Hb_033834_040--Hb_002183_090 Hb_159809_020 Hb_159809_020 Hb_033834_040--Hb_159809_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.93356 2.42797 3.41424 5.43443 9.9519 10.8739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8403 13.8565 9.90904 7.45419 2.13785

CAGE analysis