Hb_000174_150

Information

Type -
Description -
Location Contig174: 176123-188024
Sequence    

Annotation

kegg
ID rcu:RCOM_1076810
description Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor, putative (EC:1.14.19.2)
nr
ID ACG59946.1
description stearoyl-acyl-carrier protein desaturase [Ricinus communis]
swissprot
ID P22337
description Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1
trembl
ID B5AY35
description Acyl-[acyl-carrier-protein] desaturase OS=Ricinus communis GN=SAD2 PE=2 SV=1
Gene Ontology
ID GO:0045300
description acyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16563: 174350-175876 , PASA_asmbl_16564: 183213-188027 , PASA_asmbl_16565: 186710-187024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_150 0.0 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
2 Hb_001584_350 0.0657182654 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
3 Hb_000977_300 0.0693423048 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
4 Hb_000139_320 0.0704085691 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
5 Hb_005288_140 0.0712032496 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
6 Hb_001171_030 0.0761590948 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
7 Hb_000340_030 0.0762472086 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
8 Hb_012940_040 0.0769497672 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
9 Hb_000529_060 0.0792586264 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
10 Hb_004319_050 0.0811231806 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
11 Hb_000787_150 0.0813977292 - - PREDICTED: protein NDR1-like [Jatropha curcas]
12 Hb_004517_020 0.0822234234 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
13 Hb_000120_910 0.0826567878 - - plant ubiquilin, putative [Ricinus communis]
14 Hb_026198_060 0.0833392531 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
15 Hb_000260_770 0.0836544013 - - er lumen protein retaining receptor, putative [Ricinus communis]
16 Hb_002903_140 0.0839712711 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
17 Hb_031641_010 0.0860409264 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000363_120 0.0865246876 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
19 Hb_012799_140 0.0871301931 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
20 Hb_026980_020 0.087681329 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]

Gene co-expression network

sample Hb_000174_150 Hb_000174_150 Hb_001584_350 Hb_001584_350 Hb_000174_150--Hb_001584_350 Hb_000977_300 Hb_000977_300 Hb_000174_150--Hb_000977_300 Hb_000139_320 Hb_000139_320 Hb_000174_150--Hb_000139_320 Hb_005288_140 Hb_005288_140 Hb_000174_150--Hb_005288_140 Hb_001171_030 Hb_001171_030 Hb_000174_150--Hb_001171_030 Hb_000340_030 Hb_000340_030 Hb_000174_150--Hb_000340_030 Hb_001723_140 Hb_001723_140 Hb_001584_350--Hb_001723_140 Hb_000529_060 Hb_000529_060 Hb_001584_350--Hb_000529_060 Hb_001584_350--Hb_001171_030 Hb_128548_010 Hb_128548_010 Hb_001584_350--Hb_128548_010 Hb_001584_350--Hb_000977_300 Hb_004517_020 Hb_004517_020 Hb_000977_300--Hb_004517_020 Hb_000977_300--Hb_000529_060 Hb_000120_910 Hb_000120_910 Hb_000977_300--Hb_000120_910 Hb_000977_300--Hb_001171_030 Hb_000189_630 Hb_000189_630 Hb_000977_300--Hb_000189_630 Hb_000110_350 Hb_000110_350 Hb_000977_300--Hb_000110_350 Hb_000139_320--Hb_000340_030 Hb_001723_010 Hb_001723_010 Hb_000139_320--Hb_001723_010 Hb_003711_010 Hb_003711_010 Hb_000139_320--Hb_003711_010 Hb_026980_020 Hb_026980_020 Hb_000139_320--Hb_026980_020 Hb_102438_030 Hb_102438_030 Hb_000139_320--Hb_102438_030 Hb_004319_050 Hb_004319_050 Hb_005288_140--Hb_004319_050 Hb_000866_450 Hb_000866_450 Hb_005288_140--Hb_000866_450 Hb_026198_060 Hb_026198_060 Hb_005288_140--Hb_026198_060 Hb_005403_010 Hb_005403_010 Hb_005288_140--Hb_005403_010 Hb_033152_090 Hb_033152_090 Hb_005288_140--Hb_033152_090 Hb_003142_040 Hb_003142_040 Hb_001171_030--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_001171_030--Hb_002968_070 Hb_001171_030--Hb_001723_140 Hb_001171_030--Hb_000189_630 Hb_001171_030--Hb_000529_060 Hb_000340_030--Hb_001723_010 Hb_031641_010 Hb_031641_010 Hb_000340_030--Hb_031641_010 Hb_002849_170 Hb_002849_170 Hb_000340_030--Hb_002849_170 Hb_000340_030--Hb_003711_010 Hb_000340_030--Hb_000529_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.4282 70.3423 54.0258 43.603 25.3208 26.191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3424 19.4528 17.1949 45.2895 27.2019

CAGE analysis