Hb_000174_170

Information

Type -
Description -
Location Contig174: 190405-200059
Sequence    

Annotation

kegg
ID pop:POPTR_0008s07770g
description POPTRDRAFT_564123; hypothetical protein
nr
ID XP_012085826.1
description PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q8BGC0
description HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1 SV=1
trembl
ID A0A067K527
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18082 PE=4 SV=1
Gene Ontology
ID GO:0000166
description splicing factor u2af-associated protein 2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16567: 191071-193774 , PASA_asmbl_16568: 193803-200005 , PASA_asmbl_16569: 199061-199277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_170 0.0 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
2 Hb_000864_030 0.0590085886 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
3 Hb_000165_040 0.0640096316 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
4 Hb_006483_110 0.0652582254 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
5 Hb_000679_020 0.072429687 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
6 Hb_000563_130 0.0729558231 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
7 Hb_008059_010 0.0729940782 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
8 Hb_071188_010 0.073546663 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
9 Hb_002592_060 0.0768204764 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000834_200 0.0772882864 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
11 Hb_000025_690 0.0776768368 - - spliceosome associated protein, putative [Ricinus communis]
12 Hb_004310_140 0.0779064512 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000390_230 0.0786915666 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
14 Hb_000441_120 0.0787438676 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_031284_010 0.0790998847 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
16 Hb_000115_280 0.0791110944 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
17 Hb_005867_070 0.0797522414 - - DNA binding protein, putative [Ricinus communis]
18 Hb_007765_100 0.0809474454 - - PREDICTED: helicase SKI2W [Jatropha curcas]
19 Hb_000006_040 0.0815023268 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_004963_030 0.0816124256 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000174_170 Hb_000174_170 Hb_000864_030 Hb_000864_030 Hb_000174_170--Hb_000864_030 Hb_000165_040 Hb_000165_040 Hb_000174_170--Hb_000165_040 Hb_006483_110 Hb_006483_110 Hb_000174_170--Hb_006483_110 Hb_000679_020 Hb_000679_020 Hb_000174_170--Hb_000679_020 Hb_000563_130 Hb_000563_130 Hb_000174_170--Hb_000563_130 Hb_008059_010 Hb_008059_010 Hb_000174_170--Hb_008059_010 Hb_000864_030--Hb_000679_020 Hb_004800_180 Hb_004800_180 Hb_000864_030--Hb_004800_180 Hb_000864_030--Hb_008059_010 Hb_000563_420 Hb_000563_420 Hb_000864_030--Hb_000563_420 Hb_000115_280 Hb_000115_280 Hb_000864_030--Hb_000115_280 Hb_005867_070 Hb_005867_070 Hb_000165_040--Hb_005867_070 Hb_000441_120 Hb_000441_120 Hb_000165_040--Hb_000441_120 Hb_000006_040 Hb_000006_040 Hb_000165_040--Hb_000006_040 Hb_000935_010 Hb_000935_010 Hb_000165_040--Hb_000935_010 Hb_001021_150 Hb_001021_150 Hb_000165_040--Hb_001021_150 Hb_007426_110 Hb_007426_110 Hb_006483_110--Hb_007426_110 Hb_028960_020 Hb_028960_020 Hb_006483_110--Hb_028960_020 Hb_015807_050 Hb_015807_050 Hb_006483_110--Hb_015807_050 Hb_041290_020 Hb_041290_020 Hb_006483_110--Hb_041290_020 Hb_002263_020 Hb_002263_020 Hb_006483_110--Hb_002263_020 Hb_109980_010 Hb_109980_010 Hb_006483_110--Hb_109980_010 Hb_000661_030 Hb_000661_030 Hb_000679_020--Hb_000661_030 Hb_000679_020--Hb_000563_420 Hb_004920_090 Hb_004920_090 Hb_000679_020--Hb_004920_090 Hb_000906_100 Hb_000906_100 Hb_000679_020--Hb_000906_100 Hb_004267_040 Hb_004267_040 Hb_000563_130--Hb_004267_040 Hb_003645_060 Hb_003645_060 Hb_000563_130--Hb_003645_060 Hb_000603_030 Hb_000603_030 Hb_000563_130--Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_000563_130--Hb_000398_080 Hb_000011_100 Hb_000011_100 Hb_000563_130--Hb_000011_100 Hb_000836_410 Hb_000836_410 Hb_000563_130--Hb_000836_410 Hb_031284_010 Hb_031284_010 Hb_008059_010--Hb_031284_010 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_008059_010--Hb_000115_280 Hb_000457_230 Hb_000457_230 Hb_008059_010--Hb_000457_230 Hb_008059_010--Hb_000836_410 Hb_000205_260 Hb_000205_260 Hb_008059_010--Hb_000205_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1267 13.1355 18.2101 8.81613 20.6119 16.0785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4428 12.9447 11.1791 16.2523 21.2483

CAGE analysis