Hb_000174_180

Information

Type -
Description -
Location Contig174: 210452-212188
Sequence    

Annotation

kegg
ID rcu:RCOM_1076790
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002514778.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID P0C896
description Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1
trembl
ID B9RM09
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1076790 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16570: 210455-212140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_180 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000028_390 0.063914836 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
3 Hb_000665_060 0.0649873106 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
4 Hb_001449_040 0.0811490748 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
5 Hb_000590_050 0.0823422915 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
6 Hb_000192_080 0.0829687399 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
7 Hb_019616_020 0.0847002998 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
8 Hb_001571_050 0.0853911717 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
9 Hb_000388_090 0.0854930122 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
10 Hb_000011_060 0.0879392788 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
11 Hb_002600_150 0.0880221732 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
12 Hb_000890_210 0.089159777 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
13 Hb_012322_010 0.0908544613 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_000592_030 0.0911604561 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
15 Hb_013726_090 0.0921083211 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
16 Hb_003168_110 0.0925984387 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
17 Hb_004837_130 0.09300056 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
18 Hb_009296_040 0.0931159847 - - hypothetical protein L484_007435 [Morus notabilis]
19 Hb_005901_020 0.0933083703 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
20 Hb_001198_100 0.0944771327 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_000174_180 Hb_000174_180 Hb_000028_390 Hb_000028_390 Hb_000174_180--Hb_000028_390 Hb_000665_060 Hb_000665_060 Hb_000174_180--Hb_000665_060 Hb_001449_040 Hb_001449_040 Hb_000174_180--Hb_001449_040 Hb_000590_050 Hb_000590_050 Hb_000174_180--Hb_000590_050 Hb_000192_080 Hb_000192_080 Hb_000174_180--Hb_000192_080 Hb_019616_020 Hb_019616_020 Hb_000174_180--Hb_019616_020 Hb_009296_040 Hb_009296_040 Hb_000028_390--Hb_009296_040 Hb_001876_010 Hb_001876_010 Hb_000028_390--Hb_001876_010 Hb_004449_080 Hb_004449_080 Hb_000028_390--Hb_004449_080 Hb_000140_210 Hb_000140_210 Hb_000028_390--Hb_000140_210 Hb_000011_060 Hb_000011_060 Hb_000028_390--Hb_000011_060 Hb_000156_010 Hb_000156_010 Hb_000665_060--Hb_000156_010 Hb_000254_090 Hb_000254_090 Hb_000665_060--Hb_000254_090 Hb_000665_060--Hb_000192_080 Hb_009218_010 Hb_009218_010 Hb_000665_060--Hb_009218_010 Hb_000009_560 Hb_000009_560 Hb_000665_060--Hb_000009_560 Hb_056691_060 Hb_056691_060 Hb_001449_040--Hb_056691_060 Hb_000008_290 Hb_000008_290 Hb_001449_040--Hb_000008_290 Hb_000613_050 Hb_000613_050 Hb_001449_040--Hb_000613_050 Hb_001496_070 Hb_001496_070 Hb_001449_040--Hb_001496_070 Hb_001343_040 Hb_001343_040 Hb_001449_040--Hb_001343_040 Hb_005901_020 Hb_005901_020 Hb_001449_040--Hb_005901_020 Hb_000327_270 Hb_000327_270 Hb_000590_050--Hb_000327_270 Hb_020378_030 Hb_020378_030 Hb_000590_050--Hb_020378_030 Hb_000890_060 Hb_000890_060 Hb_000590_050--Hb_000890_060 Hb_009270_020 Hb_009270_020 Hb_000590_050--Hb_009270_020 Hb_000592_030 Hb_000592_030 Hb_000590_050--Hb_000592_030 Hb_001004_060 Hb_001004_060 Hb_000590_050--Hb_001004_060 Hb_007638_030 Hb_007638_030 Hb_000192_080--Hb_007638_030 Hb_000192_080--Hb_000009_560 Hb_012322_010 Hb_012322_010 Hb_000192_080--Hb_012322_010 Hb_000208_280 Hb_000208_280 Hb_000192_080--Hb_000208_280 Hb_004567_090 Hb_004567_090 Hb_000192_080--Hb_004567_090 Hb_019616_020--Hb_000011_060 Hb_019616_020--Hb_001876_010 Hb_000053_040 Hb_000053_040 Hb_019616_020--Hb_000053_040 Hb_011674_020 Hb_011674_020 Hb_019616_020--Hb_011674_020 Hb_002600_150 Hb_002600_150 Hb_019616_020--Hb_002600_150 Hb_019616_020--Hb_000028_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1251 12.0308 5.82587 15.7591 8.4218 18.2891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1362 9.00163 16.0964 18.5041 16.8385

CAGE analysis