Hb_000174_200

Information

Type -
Description -
Location Contig174: 229307-233067
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023661mg
description hypothetical protein
nr
ID XP_012085828.1
description PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
swissprot
ID Q8LB54
description Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana GN=PRP38 PE=1 SV=1
trembl
ID E6NU38
description JHL23J11.3 protein OS=Jatropha curcas GN=JHL23J11.3 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16572: 229404-233107 , PASA_asmbl_16573: 229969-230140
cDNA
(Sanger)
(ID:Location)		 002_D05.ab1: 229404-232387 , 003_A13.ab1: 229404-231179 , 004_K15.ab1: 229412-231182 , 006_N22.ab1: 229404-230994 , 008_E05.ab1: 229404-230357 , 010_J15.ab1: 229416-230938 , 014_G07.ab1: 229404-232378 , 016_F10.ab1: 229404-230953 , 021_P02.ab1: 229404-231011 , 030_L11.ab1: 229404-231144 , 032_N14.ab1: 229421-230638 , 033_O05.ab1: 229404-231006 , 035_J14.ab1: 229404-231009 , 041_F08.ab1: 229404-231003

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_200 0.0 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
2 Hb_000076_290 0.0562238573 - - translation factor sui1, putative [Ricinus communis]
3 Hb_000640_210 0.0741482761 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
4 Hb_004032_350 0.0819164973 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
5 Hb_015401_020 0.0850864276 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_000322_170 0.085645171 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
7 Hb_005144_040 0.0871949663 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
8 Hb_183510_010 0.0907510983 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
9 Hb_005399_020 0.0909744436 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
10 Hb_002270_010 0.0943909876 - - Chaperone protein dnaJ, putative [Ricinus communis]
11 Hb_000172_550 0.0945102283 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
12 Hb_005314_010 0.098108671 - - nucleotide binding protein, putative [Ricinus communis]
13 Hb_001178_060 0.0986921943 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
14 Hb_012760_200 0.1010981455 - - protein phsophatase-2a, putative [Ricinus communis]
15 Hb_000465_310 0.1012863404 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005038_020 0.1020248762 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_012395_160 0.1039440147 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
18 Hb_001431_070 0.1059019901 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
19 Hb_000260_090 0.1068319311 - - PREDICTED: ubiquitin-conjugating enzyme E2 28 [Gossypium raimondii]
20 Hb_013753_010 0.1075133196 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000174_200 Hb_000174_200 Hb_000076_290 Hb_000076_290 Hb_000174_200--Hb_000076_290 Hb_000640_210 Hb_000640_210 Hb_000174_200--Hb_000640_210 Hb_004032_350 Hb_004032_350 Hb_000174_200--Hb_004032_350 Hb_015401_020 Hb_015401_020 Hb_000174_200--Hb_015401_020 Hb_000322_170 Hb_000322_170 Hb_000174_200--Hb_000322_170 Hb_005144_040 Hb_005144_040 Hb_000174_200--Hb_005144_040 Hb_000076_290--Hb_004032_350 Hb_000076_290--Hb_000640_210 Hb_001439_180 Hb_001439_180 Hb_000076_290--Hb_001439_180 Hb_000076_290--Hb_015401_020 Hb_002270_010 Hb_002270_010 Hb_000076_290--Hb_002270_010 Hb_000640_210--Hb_000322_170 Hb_005028_010 Hb_005028_010 Hb_000640_210--Hb_005028_010 Hb_012760_200 Hb_012760_200 Hb_000640_210--Hb_012760_200 Hb_001178_060 Hb_001178_060 Hb_000640_210--Hb_001178_060 Hb_004032_350--Hb_012760_200 Hb_000152_890 Hb_000152_890 Hb_004032_350--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_004032_350--Hb_000367_290 Hb_013753_010 Hb_013753_010 Hb_004032_350--Hb_013753_010 Hb_001034_020 Hb_001034_020 Hb_004032_350--Hb_001034_020 Hb_001274_020 Hb_001274_020 Hb_015401_020--Hb_001274_020 Hb_015401_020--Hb_001439_180 Hb_005314_010 Hb_005314_010 Hb_015401_020--Hb_005314_010 Hb_015401_020--Hb_002270_010 Hb_000322_170--Hb_001178_060 Hb_005016_030 Hb_005016_030 Hb_000322_170--Hb_005016_030 Hb_000322_170--Hb_004032_350 Hb_000322_170--Hb_000076_290 Hb_005144_040--Hb_002270_010 Hb_001498_030 Hb_001498_030 Hb_005144_040--Hb_001498_030 Hb_005144_040--Hb_000076_290 Hb_005144_040--Hb_000640_210 Hb_009404_010 Hb_009404_010 Hb_005144_040--Hb_009404_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
963.127 610.669 60.3044 91.9136 764.779 994.502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
423.593 212.337 318.651 137.931 47.5362

CAGE analysis