Hb_000174_210

Information

Type -
Description -
Location Contig174: 246183-255104
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18600g
description POPTRDRAFT_724318; hypothetical protein
nr
ID AAP51059.1
description latex cyanogenic beta glucosidase [Hevea brasiliensis]
swissprot
ID Q9FIW4
description Beta-glucosidase 42 OS=Arabidopsis thaliana GN=BGLU42 PE=2 SV=1
trembl
ID Q7Y073
description Beta-glucosidase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0008422
description beta-glucosidase 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16576: 246188-255102 , PASA_asmbl_16577: 246149-255102 , PASA_asmbl_16578: 251138-251328
cDNA
(Sanger)
(ID:Location)		 003_N01.ab1: 246182-252716 , 047_H01.ab1: 246188-252113

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_210 0.0 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
2 Hb_005054_210 0.0727263419 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
3 Hb_002014_020 0.084911811 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
4 Hb_003622_040 0.0920852376 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
5 Hb_007894_170 0.0972002122 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
6 Hb_000665_050 0.0996677553 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
7 Hb_006420_080 0.1014664458 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_004044_040 0.1031819277 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
9 Hb_003994_290 0.1053773133 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
10 Hb_076233_040 0.1059685957 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
11 Hb_002681_200 0.1072846377 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
12 Hb_015778_010 0.1082387315 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
13 Hb_001218_030 0.1084275225 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
14 Hb_020025_040 0.1093693938 - - sodium-bile acid cotransporter, putative [Ricinus communis]
15 Hb_000934_190 0.1094743617 - - SER/ARG-rich protein 34A [Theobroma cacao]
16 Hb_148121_040 0.1120597463 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
17 Hb_000302_140 0.112136843 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
18 Hb_006816_260 0.1127753736 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
19 Hb_089995_010 0.1129836096 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
20 Hb_027654_050 0.1132513677 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]

Gene co-expression network

sample Hb_000174_210 Hb_000174_210 Hb_005054_210 Hb_005054_210 Hb_000174_210--Hb_005054_210 Hb_002014_020 Hb_002014_020 Hb_000174_210--Hb_002014_020 Hb_003622_040 Hb_003622_040 Hb_000174_210--Hb_003622_040 Hb_007894_170 Hb_007894_170 Hb_000174_210--Hb_007894_170 Hb_000665_050 Hb_000665_050 Hb_000174_210--Hb_000665_050 Hb_006420_080 Hb_006420_080 Hb_000174_210--Hb_006420_080 Hb_005054_210--Hb_003622_040 Hb_005765_050 Hb_005765_050 Hb_005054_210--Hb_005765_050 Hb_148121_040 Hb_148121_040 Hb_005054_210--Hb_148121_040 Hb_076233_040 Hb_076233_040 Hb_005054_210--Hb_076233_040 Hb_000045_310 Hb_000045_310 Hb_005054_210--Hb_000045_310 Hb_000236_040 Hb_000236_040 Hb_002014_020--Hb_000236_040 Hb_031862_100 Hb_031862_100 Hb_002014_020--Hb_031862_100 Hb_004889_010 Hb_004889_010 Hb_002014_020--Hb_004889_010 Hb_034380_020 Hb_034380_020 Hb_002014_020--Hb_034380_020 Hb_001218_030 Hb_001218_030 Hb_002014_020--Hb_001218_030 Hb_001828_150 Hb_001828_150 Hb_002014_020--Hb_001828_150 Hb_001123_160 Hb_001123_160 Hb_003622_040--Hb_001123_160 Hb_000934_190 Hb_000934_190 Hb_003622_040--Hb_000934_190 Hb_000300_430 Hb_000300_430 Hb_003622_040--Hb_000300_430 Hb_008232_010 Hb_008232_010 Hb_003622_040--Hb_008232_010 Hb_011344_190 Hb_011344_190 Hb_003622_040--Hb_011344_190 Hb_028396_010 Hb_028396_010 Hb_007894_170--Hb_028396_010 Hb_003041_050 Hb_003041_050 Hb_007894_170--Hb_003041_050 Hb_000538_120 Hb_000538_120 Hb_007894_170--Hb_000538_120 Hb_007894_170--Hb_000045_310 Hb_001301_110 Hb_001301_110 Hb_007894_170--Hb_001301_110 Hb_007894_060 Hb_007894_060 Hb_007894_170--Hb_007894_060 Hb_005306_180 Hb_005306_180 Hb_000665_050--Hb_005306_180 Hb_000665_050--Hb_001218_030 Hb_000414_130 Hb_000414_130 Hb_000665_050--Hb_000414_130 Hb_000665_050--Hb_001301_110 Hb_000460_030 Hb_000460_030 Hb_000665_050--Hb_000460_030 Hb_000853_150 Hb_000853_150 Hb_000665_050--Hb_000853_150 Hb_015778_010 Hb_015778_010 Hb_006420_080--Hb_015778_010 Hb_010883_050 Hb_010883_050 Hb_006420_080--Hb_010883_050 Hb_001902_140 Hb_001902_140 Hb_006420_080--Hb_001902_140 Hb_000982_080 Hb_000982_080 Hb_006420_080--Hb_000982_080 Hb_001489_080 Hb_001489_080 Hb_006420_080--Hb_001489_080 Hb_003697_040 Hb_003697_040 Hb_006420_080--Hb_003697_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.0796 21.1411 69.3308 70.7773 34.5342 32.2009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
116.993 80 88.8381 72.6451 37.5782

CAGE analysis