Hb_000174_220

Information

Type -
Description -
Location Contig174: 256148-268626
Sequence    

Annotation

kegg
ID rcu:RCOM_1076750
description cohesin subunit rad21, putative
nr
ID XP_002514774.1
description cohesin subunit rad21, putative [Ricinus communis]
swissprot
ID Q8W1Y0
description Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana GN=SYN4 PE=2 SV=1
trembl
ID B9RM05
description Cohesin subunit rad21, putative OS=Ricinus communis GN=RCOM_1076750 PE=4 SV=1
Gene Ontology
ID GO:0000228
description partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16579: 255904-264620 , PASA_asmbl_16580: 267187-267336 , PASA_asmbl_16581: 268290-268547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_220 0.0 - - cohesin subunit rad21, putative [Ricinus communis]
2 Hb_000139_090 0.0522957561 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
3 Hb_015807_070 0.0540579429 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
4 Hb_002235_300 0.0671785205 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
5 Hb_045793_010 0.0685925067 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
6 Hb_003785_040 0.070824947 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
7 Hb_001247_070 0.071602734 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
8 Hb_183963_030 0.0736343741 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000977_120 0.0739404431 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
10 Hb_009851_070 0.0740566719 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
11 Hb_000796_180 0.0747532379 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
12 Hb_000077_230 0.0770550809 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
13 Hb_006847_040 0.0787962939 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
14 Hb_000035_290 0.0803396061 - - RNA recognition motif-containing family protein [Populus trichocarpa]
15 Hb_001967_030 0.0803807757 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
16 Hb_002615_090 0.0809160349 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
17 Hb_000025_360 0.081239774 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
18 Hb_000502_050 0.0819058873 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
19 Hb_003440_050 0.0843697142 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
20 Hb_000291_050 0.0865007407 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000174_220 Hb_000174_220 Hb_000139_090 Hb_000139_090 Hb_000174_220--Hb_000139_090 Hb_015807_070 Hb_015807_070 Hb_000174_220--Hb_015807_070 Hb_002235_300 Hb_002235_300 Hb_000174_220--Hb_002235_300 Hb_045793_010 Hb_045793_010 Hb_000174_220--Hb_045793_010 Hb_003785_040 Hb_003785_040 Hb_000174_220--Hb_003785_040 Hb_001247_070 Hb_001247_070 Hb_000174_220--Hb_001247_070 Hb_000139_090--Hb_001247_070 Hb_002524_040 Hb_002524_040 Hb_000139_090--Hb_002524_040 Hb_007576_120 Hb_007576_120 Hb_000139_090--Hb_007576_120 Hb_000002_040 Hb_000002_040 Hb_000139_090--Hb_000002_040 Hb_000139_090--Hb_015807_070 Hb_001021_170 Hb_001021_170 Hb_015807_070--Hb_001021_170 Hb_007416_180 Hb_007416_180 Hb_015807_070--Hb_007416_180 Hb_004684_010 Hb_004684_010 Hb_015807_070--Hb_004684_010 Hb_008500_010 Hb_008500_010 Hb_015807_070--Hb_008500_010 Hb_011491_010 Hb_011491_010 Hb_015807_070--Hb_011491_010 Hb_000977_120 Hb_000977_120 Hb_002235_300--Hb_000977_120 Hb_002615_090 Hb_002615_090 Hb_002235_300--Hb_002615_090 Hb_000684_250 Hb_000684_250 Hb_002235_300--Hb_000684_250 Hb_002253_080 Hb_002253_080 Hb_002235_300--Hb_002253_080 Hb_000025_320 Hb_000025_320 Hb_002235_300--Hb_000025_320 Hb_002267_140 Hb_002267_140 Hb_002235_300--Hb_002267_140 Hb_000025_360 Hb_000025_360 Hb_045793_010--Hb_000025_360 Hb_000827_070 Hb_000827_070 Hb_045793_010--Hb_000827_070 Hb_076693_020 Hb_076693_020 Hb_045793_010--Hb_076693_020 Hb_006847_040 Hb_006847_040 Hb_045793_010--Hb_006847_040 Hb_045793_010--Hb_001021_170 Hb_003785_040--Hb_002615_090 Hb_031527_020 Hb_031527_020 Hb_003785_040--Hb_031527_020 Hb_004128_050 Hb_004128_050 Hb_003785_040--Hb_004128_050 Hb_009503_030 Hb_009503_030 Hb_003785_040--Hb_009503_030 Hb_000395_130 Hb_000395_130 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020 Hb_001268_350 Hb_001268_350 Hb_001247_070--Hb_001268_350 Hb_124315_020 Hb_124315_020 Hb_001247_070--Hb_124315_020 Hb_001930_010 Hb_001930_010 Hb_001247_070--Hb_001930_010 Hb_002188_110 Hb_002188_110 Hb_001247_070--Hb_002188_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.2341 31.8677 10.2957 9.58575 21.6881 25.9099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3843 14.598 21.302 11.2858 16.922

CAGE analysis