Hb_000174_260

Information

Type -
Description -
Location Contig174: 300577-304629
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18530g
description POPTRDRAFT_567152; allyl alcohol dehydrogenase family protein
nr
ID XP_012078907.1
description PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
swissprot
ID Q9SLN8
description 2-alkenal reductase (NADP(+)-dependent) OS=Nicotiana tabacum GN=DBR PE=1 SV=1
trembl
ID A0A067K8P5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13412 PE=4 SV=1
Gene Ontology
ID GO:0008270
description 2-alkenal reductase (nadp(+)-dependent)

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16582: 300614-304549 , PASA_asmbl_16583: 302554-304581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_260 0.0 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
2 Hb_005276_040 0.0650859371 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
3 Hb_001221_030 0.074679828 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
4 Hb_003605_020 0.0748074179 - - exocyst complex component sec6, putative [Ricinus communis]
5 Hb_000330_090 0.0756486883 - - ornithine carbamoyltransferase, putative [Ricinus communis]
6 Hb_000684_030 0.0784204517 - - syntaxin, putative [Ricinus communis]
7 Hb_001269_130 0.0807049426 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
8 Hb_000364_050 0.0824484113 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
9 Hb_001946_390 0.0847922391 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
10 Hb_007904_230 0.0886071098 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
11 Hb_000742_010 0.0903307281 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_000076_220 0.0929649304 - - thioredoxin domain-containing protein, putative [Ricinus communis]
13 Hb_003266_030 0.0941332781 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
14 Hb_005946_150 0.0974073131 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
15 Hb_004994_210 0.0981807798 - - phosphomannomutase family protein [Populus trichocarpa]
16 Hb_012733_040 0.0989838172 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
17 Hb_012393_030 0.1009432826 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
18 Hb_000080_130 0.1018203407 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
19 Hb_015057_020 0.1023987958 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
20 Hb_002392_010 0.1038253085 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000174_260 Hb_000174_260 Hb_005276_040 Hb_005276_040 Hb_000174_260--Hb_005276_040 Hb_001221_030 Hb_001221_030 Hb_000174_260--Hb_001221_030 Hb_003605_020 Hb_003605_020 Hb_000174_260--Hb_003605_020 Hb_000330_090 Hb_000330_090 Hb_000174_260--Hb_000330_090 Hb_000684_030 Hb_000684_030 Hb_000174_260--Hb_000684_030 Hb_001269_130 Hb_001269_130 Hb_000174_260--Hb_001269_130 Hb_002045_060 Hb_002045_060 Hb_005276_040--Hb_002045_060 Hb_015057_020 Hb_015057_020 Hb_005276_040--Hb_015057_020 Hb_002392_010 Hb_002392_010 Hb_005276_040--Hb_002392_010 Hb_000428_060 Hb_000428_060 Hb_005276_040--Hb_000428_060 Hb_005276_040--Hb_001221_030 Hb_001221_030--Hb_000684_030 Hb_001221_030--Hb_003605_020 Hb_000200_300 Hb_000200_300 Hb_001221_030--Hb_000200_300 Hb_001221_030--Hb_000330_090 Hb_065968_010 Hb_065968_010 Hb_003605_020--Hb_065968_010 Hb_000395_280 Hb_000395_280 Hb_003605_020--Hb_000395_280 Hb_001957_010 Hb_001957_010 Hb_003605_020--Hb_001957_010 Hb_003605_020--Hb_001269_130 Hb_019654_020 Hb_019654_020 Hb_003605_020--Hb_019654_020 Hb_049575_010 Hb_049575_010 Hb_000330_090--Hb_049575_010 Hb_000330_090--Hb_001269_130 Hb_002693_030 Hb_002693_030 Hb_000330_090--Hb_002693_030 Hb_007904_230 Hb_007904_230 Hb_000330_090--Hb_007904_230 Hb_007199_020 Hb_007199_020 Hb_000330_090--Hb_007199_020 Hb_000057_110 Hb_000057_110 Hb_000684_030--Hb_000057_110 Hb_003266_030 Hb_003266_030 Hb_000684_030--Hb_003266_030 Hb_000684_030--Hb_000200_300 Hb_000684_030--Hb_003605_020 Hb_000663_060 Hb_000663_060 Hb_001269_130--Hb_000663_060 Hb_000080_130 Hb_000080_130 Hb_001269_130--Hb_000080_130 Hb_000364_050 Hb_000364_050 Hb_001269_130--Hb_000364_050 Hb_003098_070 Hb_003098_070 Hb_001269_130--Hb_003098_070 Hb_006824_010 Hb_006824_010 Hb_001269_130--Hb_006824_010 Hb_005946_150 Hb_005946_150 Hb_001269_130--Hb_005946_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.91719 4.72039 18.7364 15.3899 4.15087 4.13296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4537 11.1211 9.22509 15.0516 13.8675

CAGE analysis