Hb_000175_030

Information

Type -
Description -
Location Contig175: 14478-17723
Sequence    

Annotation

kegg
ID tcc:TCM_027264
description Signal recognition particle, SRP54 subunit protein
nr
ID XP_007023271.1
description Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
swissprot
ID P49972
description Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1
trembl
ID A0A061G8Z1
description Signal recognition particle, SRP54 subunit protein OS=Theobroma cacao GN=TCM_027264 PE=3 SV=1
Gene Ontology
ID GO:0048500
description signal recognition particle 54 kda protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16663: 14691-17548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_030 0.0 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
2 Hb_000673_020 0.0697369184 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
3 Hb_161175_010 0.0814705247 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
4 Hb_011021_040 0.0820512601 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
5 Hb_003880_030 0.0869066527 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
6 Hb_003462_120 0.0871179822 - - Acidic endochitinase [Theobroma cacao]
7 Hb_007192_100 0.0896345437 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
8 Hb_000125_210 0.0915945761 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
9 Hb_001545_160 0.093764204 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
10 Hb_000934_190 0.094510966 - - SER/ARG-rich protein 34A [Theobroma cacao]
11 Hb_013405_140 0.1005554316 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
12 Hb_003291_020 0.1016419458 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
13 Hb_002304_160 0.1022121878 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]
14 Hb_027654_050 0.1024325274 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
15 Hb_005656_100 0.1027259964 - - conserved hypothetical protein [Ricinus communis]
16 Hb_148209_010 0.1040184127 - - RAS-related GTP-binding family protein [Populus trichocarpa]
17 Hb_001222_080 0.1045882175 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
18 Hb_002016_080 0.1069546032 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
19 Hb_010883_050 0.1072188541 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
20 Hb_003849_150 0.1073334254 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_030 Hb_000175_030 Hb_000673_020 Hb_000673_020 Hb_000175_030--Hb_000673_020 Hb_161175_010 Hb_161175_010 Hb_000175_030--Hb_161175_010 Hb_011021_040 Hb_011021_040 Hb_000175_030--Hb_011021_040 Hb_003880_030 Hb_003880_030 Hb_000175_030--Hb_003880_030 Hb_003462_120 Hb_003462_120 Hb_000175_030--Hb_003462_120 Hb_007192_100 Hb_007192_100 Hb_000175_030--Hb_007192_100 Hb_013405_140 Hb_013405_140 Hb_000673_020--Hb_013405_140 Hb_000673_020--Hb_003880_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_000934_190 Hb_000934_190 Hb_000673_020--Hb_000934_190 Hb_002016_080 Hb_002016_080 Hb_000673_020--Hb_002016_080 Hb_000125_210 Hb_000125_210 Hb_161175_010--Hb_000125_210 Hb_019113_020 Hb_019113_020 Hb_161175_010--Hb_019113_020 Hb_000705_290 Hb_000705_290 Hb_161175_010--Hb_000705_290 Hb_003849_150 Hb_003849_150 Hb_161175_010--Hb_003849_150 Hb_161175_010--Hb_000673_020 Hb_007037_020 Hb_007037_020 Hb_011021_040--Hb_007037_020 Hb_013399_050 Hb_013399_050 Hb_011021_040--Hb_013399_050 Hb_011021_040--Hb_013405_140 Hb_011021_040--Hb_002016_080 Hb_001172_120 Hb_001172_120 Hb_011021_040--Hb_001172_120 Hb_000384_120 Hb_000384_120 Hb_003880_030--Hb_000384_120 Hb_072922_020 Hb_072922_020 Hb_003880_030--Hb_072922_020 Hb_001979_020 Hb_001979_020 Hb_003880_030--Hb_001979_020 Hb_001329_150 Hb_001329_150 Hb_003880_030--Hb_001329_150 Hb_000922_040 Hb_000922_040 Hb_003880_030--Hb_000922_040 Hb_001481_140 Hb_001481_140 Hb_003462_120--Hb_001481_140 Hb_005137_060 Hb_005137_060 Hb_003462_120--Hb_005137_060 Hb_004672_010 Hb_004672_010 Hb_003462_120--Hb_004672_010 Hb_003462_120--Hb_000934_190 Hb_003783_030 Hb_003783_030 Hb_003462_120--Hb_003783_030 Hb_007192_100--Hb_001172_120 Hb_001005_080 Hb_001005_080 Hb_007192_100--Hb_001005_080 Hb_015807_100 Hb_015807_100 Hb_007192_100--Hb_015807_100 Hb_000115_230 Hb_000115_230 Hb_007192_100--Hb_000115_230 Hb_152910_020 Hb_152910_020 Hb_007192_100--Hb_152910_020 Hb_007192_100--Hb_000384_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.85242 9.23716 9.61805 17.5095 4.68374 6.77244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.0506 30.9158 30.7665 12.5691 16.3317

CAGE analysis